View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_12 (Length: 366)
Name: NF12050_low_12
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 41874795 - 41875130
Alignment:
| Q |
18 |
attatgacatgacatgtgcatattttgtgtgatgcatgtgtctgcgggttaaatattatgtgtgatgtcttagtggcgggttgaccttgtctgaatcatt |
117 |
Q |
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| T |
41874795 |
attatggcatgacatgtgcatattttgtgtgatgcatgtc---gtgggttaaatattatgtgtgatgtcttagtggcgggttgaccttatctggatcatt |
41874891 |
T |
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| Q |
118 |
tagttctcatgagcatgcatcttacgcataattgcatttgaatccattatatttctgtgatcaattacttagtattttctatctttaccttttctctttc |
217 |
Q |
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| T |
41874892 |
tagttctcaggagcatgcatcttacgcataattgcatttgaatccattatatttttgtgatcaattacttagtattttctatctttaccttttctctttc |
41874991 |
T |
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| Q |
218 |
aagataagttacttacctgaaagaggaaggccaaatgacaatgggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatca |
317 |
Q |
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| T |
41874992 |
aagatcagttacttacctgaaagaggaaggccaaatgacaatgggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatca |
41875091 |
T |
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| Q |
318 |
ttgatccgaaaaactccagttctctcctccaactctctg |
356 |
Q |
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| T |
41875092 |
ttgatccgaaaaactccagttctctcctccaactctctg |
41875130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 9554870 - 9554727
Alignment:
| Q |
25 |
catgacatgtgcatattttgtgtgatgcatgtgtctgcgggttaaatattatgtgtgatgtcttagtggcgggttgaccttgtctgaatcatttagttct |
124 |
Q |
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| T |
9554870 |
catgacatgtgtatattgtgtgtgatgcatgtgtg-gcgggttaaatattatgtgcgatgctttagtggcgggatgactatatccagatcatttagttat |
9554772 |
T |
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| Q |
125 |
catgagcatgcatcttacgcataattgcatttgaatccattatat |
169 |
Q |
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| T |
9554771 |
caggaacatgcatcttatacataattgcatttaaatccattatat |
9554727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 356
Target Start/End: Complemental strand, 40869182 - 40869039
Alignment:
| Q |
213 |
ctttcaagataagttacttacctgaaagaggaaggccaaatgacaatgggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaatta |
312 |
Q |
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| T |
40869182 |
ctttcaagatcaattacttaaatggaagaggagagtcaaataccaaagggaagatatgctgctgatatttcatccataaatgaagcacatgccagaataa |
40869083 |
T |
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| Q |
313 |
aatcattgatccgaaaaactccagttctctcctccaactctctg |
356 |
Q |
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| T |
40869082 |
aatcattgattcttaagaccccagttctctcctccacctctctg |
40869039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 355
Target Start/End: Complemental strand, 24818625 - 24818533
Alignment:
| Q |
263 |
aaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctct |
355 |
Q |
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||||||||| ||||| || ||||| | ||||||||| | | ||| |||||||||||| ||| | |||||||||||||||||||| |||||| |
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| T |
24818625 |
aaaatatgccgctgacatatcctcagtaaaagaagcatacgataggattaaatcattggtccatagaactccagttctctcctccacctctct |
24818533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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