View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_14 (Length: 339)
Name: NF12050_low_14
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 47390919 - 47391240
Alignment:
| Q |
1 |
atggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaacagaggcaaaaccatattttcttttcct |
100 |
Q |
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| T |
47390919 |
atggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaacagaggcaaaaccatattttcttttcct |
47391018 |
T |
|
| Q |
101 |
ttttggtggtttgtgtgtggcattgtcaaaa-agatatatatataaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattct |
199 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391019 |
ttttggtggtttgtgtgtggcattgtcaaaagatatatatatataaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattct |
47391118 |
T |
|
| Q |
200 |
gagctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttca |
299 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391119 |
gagctgacacttctcaatcctctaatatcttccctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttca |
47391218 |
T |
|
| Q |
300 |
aatattttttctccttctttgc |
321 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
47391219 |
aatattttttctccttctttgc |
47391240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 40625201 - 40624890
Alignment:
| Q |
3 |
ggttgaaacatgttacttttattctgacatgaaacatgcaattccgatcaataaactcattctatgcaaacagaggcaaaaccatattttcttttccttt |
102 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
40625201 |
ggttgaaacatgttacttttattctgacatgaaacgtgcaattccgatcaataaactc-ttctatacaaacagaggcaaaaccatattttcttttccttt |
40625103 |
T |
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| Q |
103 |
ttggtggtttgtgtgtggcattgtcaaaaagatatatatataaataaaataaggggtgaagagagaacctcagattctttttggcgctgcttattctgag |
202 |
Q |
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||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40625102 |
gtggtggtaagtgtg--gcattgtcaatag---atatatataaataaaataaggggtgaagagagaacctcagcttctttttggcgctgcttattctgag |
40625008 |
T |
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| Q |
203 |
ctgacacttctcaatcctctaatatcttctctttcaaatcagaaatctccatttgcagcttagctttttctgttttcccaagctagaagtttcttcaaat |
302 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||||| | |
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| T |
40625007 |
ctgacacttctcgatcctctaatatcttctctttcaaatcagaaatctccttttgcagcttagctttctgt-ttttcccaagctagaagtttcttcaagt |
40624909 |
T |
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| Q |
303 |
attttttctccttctttgc |
321 |
Q |
| |
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||||||||||||| ||||| |
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| T |
40624908 |
attttttctccttttttgc |
40624890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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