View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_15 (Length: 326)
Name: NF12050_low_15
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 316
Target Start/End: Original strand, 36986457 - 36986768
Alignment:
| Q |
5 |
ttcgttgagttgtttgggtcaacaaaaacttcatttccaacagcaatggcttcaataatggtgtttggttggtaagcaacgatgtttctttcgacccatg |
104 |
Q |
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| T |
36986457 |
ttcgttgagttgtttggatcaacaaaaacttcatttccaacagcaatggcttctataatggtgtttggttggtaagcaacgatgtttctttcgacccatg |
36986556 |
T |
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| Q |
105 |
agagtgcaaaagattgagactttgctgcagcaaagagttgttggttgggtagatcgacagtgagtttgattttggaaccggataatgcacgtagaactga |
204 |
Q |
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| T |
36986557 |
agagtgcaaaagattgagactttgctgcagcaaagagttgttggttgggtagatcgacagtgagtttgattttggaaccggataatgcacgtagaactga |
36986656 |
T |
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| Q |
205 |
tgggtctgtgtcgtagattttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtaggttgtttgctatgcgaccgtag |
304 |
Q |
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| T |
36986657 |
tgggtctgtgtcgtagattttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtaggttgtttgctatgcgaccgtag |
36986756 |
T |
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| Q |
305 |
tttatgcctatg |
316 |
Q |
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| T |
36986757 |
tttatgcctatg |
36986768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 306
Target Start/End: Complemental strand, 36363349 - 36363249
Alignment:
| Q |
206 |
gggtctgtgtcgtagattttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtaggttgtttgctatgcgaccgtagt |
305 |
Q |
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| T |
36363349 |
gggtcggtgtcgtagagtttgacccggtcgattccttgtgattttagaagcttgactactttgaatgctgagggtaggttgtttgctatgcgaccatagt |
36363250 |
T |
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| Q |
306 |
t |
306 |
Q |
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| T |
36363249 |
t |
36363249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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