View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_18 (Length: 315)
Name: NF12050_low_18
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 23324244 - 23323960
Alignment:
| Q |
13 |
gagatgaagctaaaaatcagctgcaaaaactaatgaacaacctaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324244 |
gagatgaagctaaaaatcagctgcaaaaactaatgaacaacccaagtccaatccatttccaagacaagttcatttctggattccaacaagaaaatcctct |
23324145 |
T |
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| Q |
113 |
aatgtttcactcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324144 |
aatgtttcactcttcaaaccctagcattacagaatctagcagtctctcacacggttctccaccggtcgattcattctttgaaactgtttcttcacctgag |
23324045 |
T |
|
| Q |
213 |
ttttcaaacaccaacatggcctatctcaaccatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagttt |
297 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23324044 |
ttttcaaacaccaacatggcctatctcaatcatcatcaaaatcaacacttcaattatttgagggtgcccagtgaaaagccagttt |
23323960 |
T |
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