View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12050_low_19 (Length: 295)

Name: NF12050_low_19
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12050_low_19
NF12050_low_19
[»] chr6 (28 HSPs)
chr6 (205-263)||(3528824-3528882)
chr6 (210-263)||(6647408-6647461)
chr6 (208-256)||(6536975-6537023)
chr6 (208-256)||(9027606-9027654)
chr6 (175-223)||(10755124-10755172)
chr6 (205-256)||(34403883-34403934)
chr6 (205-275)||(2112209-2112279)
chr6 (205-263)||(4420664-4420722)
chr6 (205-257)||(9667976-9668028)
chr6 (205-256)||(7931717-7931768)
chr6 (205-264)||(33832264-33832323)
chr6 (210-253)||(33887861-33887904)
chr6 (205-251)||(1575928-1575974)
chr6 (180-257)||(2460116-2460194)
chr6 (205-259)||(8035139-8035193)
chr6 (210-256)||(13908491-13908537)
chr6 (205-251)||(31624123-31624169)
chr6 (230-275)||(1497990-1498035)
chr6 (205-262)||(20368171-20368228)
chr6 (206-263)||(24745440-24745497)
chr6 (212-257)||(27909636-27909681)
chr6 (205-254)||(31420975-31421024)
chr6 (207-259)||(281841-281893)
chr6 (205-245)||(4080955-4080995)
chr6 (205-257)||(7148693-7148745)
chr6 (205-257)||(7785735-7785787)
chr6 (207-275)||(10031741-10031809)
chr6 (205-257)||(10616532-10616584)
[»] chr3 (37 HSPs)
chr3 (193-254)||(42745068-42745130)
chr3 (205-257)||(3044250-3044302)
chr3 (212-263)||(33883748-33883799)
chr3 (153-263)||(37273155-37273268)
chr3 (210-263)||(23808060-23808113)
chr3 (208-257)||(25925769-25925818)
chr3 (205-257)||(3015834-3015886)
chr3 (205-256)||(36101596-36101647)
chr3 (205-256)||(36139906-36139957)
chr3 (210-253)||(36445856-36445899)
chr3 (180-257)||(43115083-43115161)
chr3 (205-263)||(47513674-47513732)
chr3 (210-263)||(39602206-39602259)
chr3 (211-256)||(45432936-45432981)
chr3 (205-257)||(1217791-1217843)
chr3 (212-256)||(5166351-5166395)
chr3 (180-271)||(11039304-11039396)
chr3 (205-252)||(5391911-5391958)
chr3 (210-257)||(24785232-24785279)
chr3 (228-263)||(34924552-34924587)
chr3 (205-256)||(36200124-36200175)
chr3 (208-275)||(36887513-36887580)
chr3 (181-263)||(54837000-54837083)
chr3 (205-259)||(31010427-31010481)
chr3 (213-263)||(40665450-40665500)
chr3 (210-252)||(52440658-52440700)
chr3 (204-257)||(13804804-13804857)
chr3 (205-254)||(29771868-29771917)
chr3 (205-246)||(41724250-41724291)
chr3 (205-270)||(50952347-50952412)
chr3 (193-252)||(5396229-5396289)
chr3 (206-250)||(15304339-15304383)
chr3 (205-257)||(21574517-21574569)
chr3 (205-257)||(24281074-24281126)
chr3 (207-275)||(33725867-33725935)
chr3 (231-263)||(36769985-36770017)
chr3 (205-257)||(51206489-51206541)
[»] chr1 (36 HSPs)
chr1 (210-260)||(10199404-10199454)
chr1 (206-263)||(46252674-46252731)
chr1 (178-257)||(6292520-6292599)
chr1 (180-254)||(4868430-4868504)
chr1 (206-256)||(37593676-37593726)
chr1 (214-275)||(4700066-4700127)
chr1 (210-271)||(5886990-5887051)
chr1 (205-262)||(31517731-31517788)
chr1 (211-259)||(25479606-25479654)
chr1 (208-263)||(8016278-8016333)
chr1 (180-257)||(4445735-4445813)
chr1 (205-275)||(12641721-12641791)
chr1 (205-275)||(27140487-27140557)
chr1 (205-263)||(28689443-28689501)
chr1 (208-257)||(5276320-5276369)
chr1 (205-262)||(10744323-10744380)
chr1 (149-252)||(34290268-34290373)
chr1 (218-257)||(15361067-15361106)
chr1 (205-256)||(38170681-38170732)
chr1 (211-254)||(47877139-47877182)
chr1 (205-255)||(3223697-3223746)
chr1 (209-259)||(3224448-3224498)
chr1 (205-259)||(11639407-11639461)
chr1 (204-257)||(6262047-6262100)
chr1 (210-263)||(7136994-7137047)
chr1 (205-254)||(10854763-10854812)
chr1 (210-251)||(28910023-28910064)
chr1 (206-275)||(31294513-31294582)
chr1 (208-257)||(43722322-43722371)
chr1 (208-245)||(47917275-47917312)
chr1 (205-257)||(4699606-4699658)
chr1 (209-257)||(7218069-7218117)
chr1 (210-258)||(15687082-15687130)
chr1 (205-269)||(19412588-19412652)
chr1 (205-257)||(35925717-35925769)
chr1 (219-263)||(38503470-38503514)
[»] chr8 (26 HSPs)
chr8 (205-275)||(779052-779122)
chr8 (205-251)||(4281579-4281625)
chr8 (205-259)||(41606894-41606948)
chr8 (210-275)||(20672759-20672824)
chr8 (205-252)||(2594988-2595035)
chr8 (180-254)||(13000389-13000464)
chr8 (213-259)||(30389124-30389170)
chr8 (207-263)||(21653102-21653158)
chr8 (211-258)||(9700027-9700074)
chr8 (205-252)||(9835891-9835938)
chr8 (211-254)||(12132865-12132908)
chr8 (216-263)||(42215084-42215131)
chr8 (211-253)||(3600735-3600777)
chr8 (211-253)||(14339602-14339644)
chr8 (205-251)||(30191132-30191178)
chr8 (205-250)||(32840976-32841022)
chr8 (184-257)||(39551178-39551252)
chr8 (208-257)||(25869260-25869309)
chr8 (205-262)||(30918135-30918191)
chr8 (180-256)||(37822624-37822700)
chr8 (205-257)||(11185248-11185300)
chr8 (205-257)||(11569448-11569500)
chr8 (205-257)||(12851203-12851255)
chr8 (207-259)||(31862518-31862570)
chr8 (205-269)||(31875586-31875650)
chr8 (205-257)||(42215297-42215349)
[»] chr2 (30 HSPs)
chr2 (205-263)||(41809236-41809294)
chr2 (206-275)||(33942159-33942228)
chr2 (205-253)||(14666579-14666627)
chr2 (205-256)||(1056120-1056171)
chr2 (138-257)||(15120210-15120332)
chr2 (205-276)||(34652027-34652098)
chr2 (205-263)||(12313164-12313222)
chr2 (213-263)||(35379015-35379065)
chr2 (205-257)||(1939323-1939375)
chr2 (205-257)||(7283023-7283075)
chr2 (211-263)||(16867760-16867812)
chr2 (211-263)||(44443342-44443394)
chr2 (205-263)||(9174836-9174895)
chr2 (210-269)||(32364727-32364786)
chr2 (208-263)||(43910993-43911048)
chr2 (205-252)||(44606101-44606148)
chr2 (205-259)||(1647261-1647315)
chr2 (205-263)||(29316766-29316824)
chr2 (205-275)||(41817177-41817247)
chr2 (138-264)||(43529779-43529908)
chr2 (210-275)||(12147466-12147531)
chr2 (206-263)||(43199776-43199833)
chr2 (219-263)||(7928304-7928348)
chr2 (205-257)||(10567084-10567136)
chr2 (226-262)||(18840818-18840854)
chr2 (205-257)||(28677650-28677702)
chr2 (205-245)||(30538164-30538204)
chr2 (205-257)||(40158745-40158797)
chr2 (210-257)||(40682390-40682438)
chr2 (205-257)||(43065441-43065493)
[»] chr7 (21 HSPs)
chr7 (205-257)||(7244707-7244759)
chr7 (205-257)||(46082063-46082115)
chr7 (153-248)||(24967097-24967195)
chr7 (205-263)||(22551396-22551454)
chr7 (205-263)||(25670577-25670635)
chr7 (205-254)||(47134748-47134797)
chr7 (208-263)||(21247946-21248002)
chr7 (208-263)||(529396-529451)
chr7 (205-252)||(11048059-11048106)
chr7 (138-257)||(23214882-23215004)
chr7 (205-259)||(12234880-12234934)
chr7 (205-251)||(15740402-15740448)
chr7 (205-263)||(25596054-25596112)
chr7 (230-275)||(22283760-22283805)
chr7 (210-263)||(35267383-35267436)
chr7 (180-248)||(36537944-36538013)
chr7 (205-245)||(9423585-9423625)
chr7 (205-245)||(20888385-20888425)
chr7 (208-263)||(34035938-34035994)
chr7 (180-255)||(39360052-39360128)
chr7 (205-257)||(43250690-43250742)
[»] chr5 (20 HSPs)
chr5 (205-257)||(10125709-10125761)
chr5 (205-257)||(41957442-41957494)
chr5 (205-275)||(10272422-10272492)
chr5 (210-256)||(17258879-17258925)
chr5 (205-254)||(12467163-12467212)
chr5 (211-263)||(33533536-33533588)
chr5 (205-256)||(12459992-12460043)
chr5 (205-256)||(13604840-13604891)
chr5 (210-256)||(36639550-36639596)
chr5 (205-263)||(37611206-37611264)
chr5 (205-263)||(37787936-37787994)
chr5 (180-248)||(7674684-7674753)
chr5 (211-256)||(11707083-11707128)
chr5 (226-263)||(38104869-38104906)
chr5 (205-257)||(499722-499774)
chr5 (204-256)||(1550925-1550977)
chr5 (205-257)||(8177523-8177575)
chr5 (205-257)||(14331394-14331446)
chr5 (210-258)||(40534225-40534273)
chr5 (210-257)||(42100338-42100386)
[»] scaffold0147 (2 HSPs)
scaffold0147 (205-263)||(12695-12753)
scaffold0147 (205-257)||(4926-4978)
[»] chr4 (24 HSPs)
chr4 (205-258)||(1137738-1137791)
chr4 (205-262)||(40532585-40532642)
chr4 (184-275)||(6978931-6979023)
chr4 (207-275)||(11264310-11264378)
chr4 (212-256)||(28300297-28300341)
chr4 (208-256)||(46019623-46019671)
chr4 (205-256)||(23819117-23819168)
chr4 (216-263)||(55084483-55084530)
chr4 (205-263)||(2996594-2996652)
chr4 (205-259)||(24929518-24929572)
chr4 (180-257)||(27123317-27123395)
chr4 (218-256)||(47145990-47146028)
chr4 (213-250)||(24747353-24747390)
chr4 (211-252)||(29556989-29557030)
chr4 (205-270)||(44249299-44249364)
chr4 (206-263)||(46401286-46401342)
chr4 (226-271)||(53792584-53792629)
chr4 (205-245)||(488117-488157)
chr4 (213-257)||(7694009-7694053)
chr4 (211-259)||(8469374-8469422)
chr4 (205-257)||(20936220-20936272)
chr4 (205-257)||(28232572-28232624)
chr4 (205-257)||(33534160-33534212)
chr4 (210-254)||(43824313-43824357)


Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 3528882 - 3528824
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||    
T  3528882 aacaacttatgacatgtccataacttgttttcatcttattttcataagctctccaagat 3528824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 6647461 - 6647408
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||    
T  6647461 cttatgacatgttcataagatgttttcaacttattttcataagctctctaagat 6647408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 6537023 - 6536975
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  6537023 aacttatgacatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 9027654 - 9027606
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||||| || |||||||||||| ||||||||||||||||||    
T  9027654 aacttatgacatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 10755124 - 10755172
Alignment:
Q  175 acatttgagactgtttgaaagaatttattgaacaacttatgacatgttc 223  Q
    ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  10755124 acatttgagactgtttgaaaggatttatggaacaacctatgacatgttc 10755172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 34403934 - 34403883
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  34403934 aacaacttatgacatgttcataaggtgttttcaccttatttccataagctct 34403883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 2112279 - 2112209
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||||||||||||||| |||||||||||   ||||||  |||||| ||||||||| |||||| ||||    
T  2112279 aacaacttatgacatgttcataagttgttttcggtttatttctataagcactctaagatagtttatgaaaa 2112209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 4420722 - 4420664
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||| |||||||||||||| ||| |||||||| ||||||| ||||||||||| |||||    
T  4420722 aacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagat 4420664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 9667976 - 9668028
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| || ||| |||||||| ||||||| |||||||||||    
T  9667976 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 9668028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 7931717 - 7931768
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||||||||||  |||||||||||| ||||||| | ||||||||    
T  7931717 aacaacttatgacatgttcttaagttgttttcagcttatttccgtaagctct 7931768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 33832264 - 33832323
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatg 264  Q
    |||||||||||||||||| | |||||||||| | ||||||||||||   |||||||||||    
T  33832264 aacaacttatgacatgtttataagttgtttttagcttattttcatatattctctaagatg 33832323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 33887904 - 33887861
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagc 253  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||    
T  33887904 cttatgacatgttcacaagttgttttcaacttatttccataagc 33887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 1575974 - 1575928
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||||||||||||||||||| ||| |||||| | |||||||||||||    
T  1575974 aacaacttatgacatgttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 2460116 - 2460194
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||| |||  |||| ||| |||||||||||||||    |||||||||||| ||||||| |||||||||||    
T  2460116 tgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 2460194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 8035139 - 8035193
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||||||||||||||| ||| || ||||||||| ||||||||| |||||| ||||    
T  8035139 aacaacttatgacatggtcataacttgttttcaacttattttcgtaagctttcta 8035193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 13908537 - 13908491
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||  ||| |||||||| ||||||||||||||||||    
T  13908537 cttatgacatgttcgtaagctgttttcagcttattttcataagctct 13908491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 31624169 - 31624123
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||| ||||||||||||||| ||| |||||||| |||||||||||||    
T  31624169 aacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 1498035 - 1497990
Alignment:
Q  230 tgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||| ||||||||||||||||||| ||||| |||||| ||||    
T  1498035 tgttttcaccttattttcataagctctccaagatagtttatgaaaa 1497990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 20368171 - 20368228
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaaga 262  Q
    |||||||||||||||||||| ||| |  ||||| |||||||||||||| |||| ||||    
T  20368171 aacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaaga 20368228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 24745497 - 24745440
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||||  |||| |||||||||||  |||||||| | ||||||||||||||    
T  24745497 acaacttatgacaccttcataagttgttttcggcttatttttacaagctctctaagat 24745440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 27909636 - 27909681
Alignment:
Q  212 tatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||| || |||||||||||| ||||||| |||||||||||    
T  27909636 tatgacatgtccataagttgttttcagcttatttccataagctctc 27909681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 31421024 - 31420975
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    ||||||||||  ||| |||| |||||||||||| ||||||||||||||||    
T  31421024 aacaacttatcgcatattcataagttgttttcagcttattttcataagct 31420975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 281841 - 281893
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||||||||||||||  | |||||||||||| ||||||| ||| |||||||||    
T  281841 caacttatgacatgtctataagttgttttcagcttatttccatgagctctcta 281893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 4080995 - 4080955
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  4080995 aacaacttatgccatgttcataagttgttttcaacttattt 4080955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 7148745 - 7148693
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||| ||| || ||| | |||||| |||||||||||||||||||    
T  7148745 aacaacttatgacttgtccataagctattttcaacttattttcataagctctc 7148693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7785735 - 7785787
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||||  | |||||||||||| ||||||| |||||||||||    
T  7785735 aacagcttatgacatgtctataagttgttttcagcttatttccataagctctc 7785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 10031809 - 10031741
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||| ||||| | || |||||||||||||||||||| | ||||||||| ||||  | |||||||||    
T  10031809 caacttacgacatatccataagttgttttcatcttatttccttaagctctccaagacagcttataaaaa 10031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 10616532 - 10616584
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| |  ||||||| |||| |||||||| ||||||||||    
T  10616532 aacaacttatgacatgtccgtaagttgtgttcagcttatttttataagctctc 10616584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 42745130 - 42745068
Alignment:
Q  193 aagaatttat-tgaacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  42745130 aagaatttatgtaaacaacttatgacatgttcataagttgttttcatcttatttccataagct 42745068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 3044250 - 3044302
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  3044250 aacaacttatgacatgttcataagctgttttcaacttattttcataagctctc 3044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 33883748 - 33883799
Alignment:
Q  212 tatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcataagttctctaagat 33883799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 37273268 - 37273155
Alignment:
Q  153 ttgaacttatctattagcataaacatt--tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcat 249  Q
    |||||||||| ||||||||||| || |  ||||||||||||  |||  |||| ||| ||||||||||||||| || |||||||||||| ||||||| |||    
T  37273268 ttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccat 37273169  T
Q  250 aagctctctaagat 263  Q
    ||| |||| |||||    
T  37273168 aagttctccaagat 37273155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 23808060 - 23808113
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||    
T  23808060 cttatgacatgttcacaaattgttttcatcttattttcataaactctccaagat 23808113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 25925818 - 25925769
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  25925818 aacttatgacatgttcataagctgttttcaacttattttcataagctctc 25925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 3015834 - 3015886
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| || ||| ||||||||||||||||| ||||||||||    
T  3015834 aacaacttatgacatgtccataagatgttttcatcttattttaataagctctc 3015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 36101647 - 36101596
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||| ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  36101647 aacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 36139957 - 36139906
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||| ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  36139957 aacagcttatgacatgttcacaagctgttttcagcttattttcataagctct 36139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 36445899 - 36445856
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagc 253  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  36445899 cttatgacatgttcattagttgttttcatcttattttcataagc 36445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 43115161 - 43115083
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||| |||||| |||| ||||| ||| ||||||||||||||| || || ||||||||| ||||||| |||||||||||    
T  43115161 tgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctc 43115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 47513732 - 47513674
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||| |||||||| ||||| ||||||||||||  |||||||||||||||||| |||||    
T  47513732 aacaagttatgacacgttcataagttgttttcaatttattttcataagctctccaagat 47513674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 39602206 - 39602259
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||| || ||||||||| |||||||||||||| |||| |||||    
T  39602206 cttatgacatgttcataaattgttttcaacttattttcataagttctcaaagat 39602259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 45432936 - 45432981
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||||| |||||||||||| ||||||| ||||||||||    
T  45432936 ttatgacatgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 1217791 - 1217843
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||||||| || ||||||||||||||||| ||||||||| ||||    
T  1217791 aacagcttatgacatgtccataagttgttttcatcttactttcataagttctc 1217843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 5166395 - 5166351
Alignment:
Q  212 tatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||| ||| ||||||||||||||||||||| |||||    
T  5166395 tatgacatgttcataagctgttttcatcttattttcatacgctct 5166351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 11039304 - 11039396
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttata 271  Q
    |||||||||||||||||  |||| ||| ||  ||||||||||| || |||||||||||| ||||| | |||||||| |||||||  |||||||    
T  11039304 tgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagcttatctccataagctatctaagaaagtttata 11039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 5391958 - 5391911
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    |||| ||||||||||||||| ||| |||||||| ||||||||||||||    
T  5391958 aacagcttatgacatgttcataagctgttttcaacttattttcataag 5391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 24785279 - 24785232
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||| |||||||||| | ||||||| |||||||||||    
T  24785279 cttatgacatgttcataagttgtttttagcttatttacataagctctc 24785232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 263
Target Start/End: Original strand, 34924552 - 34924587
Alignment:
Q  228 gttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||| |||||||||||||||||||||||||    
T  34924552 gttgttttcagcttattttcataagctctctaagat 34924587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 36200175 - 36200124
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||||| || |||||||||||| ||||||| ||| ||||||    
T  36200175 aacaacttatgacatgtccataagttgttttcagcttatttccatgagctct 36200124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 36887580 - 36887513
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||| ||||||||||| ||| |||||||| |||||||||||||| |||  ||||||| |||| ||||    
T  36887580 aacttttgacatgttcataagatgttttcagcttattttcataagttcttcaagatggcttatgaaaa 36887513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 54837000 - 54837083
Alignment:
Q  181 gagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||| ||||||||||  || || ||||||||||||||| || ||||||||  |||||||| ||||||| || |||||    
T  54837000 gagactgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataagctgtccaagat 54837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 31010481 - 31010427
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    ||||||||||||||||| || ||| |||||||| |||| || |||||||||||||    
T  31010481 aacaacttatgacatgtccataagctgttttcagcttaattccataagctctcta 31010427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 40665500 - 40665450
Alignment:
Q  213 atgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||| ||| |||||||| |||||||| |||||||||| |||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataagctctccaagat 40665450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 52440658 - 52440700
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    ||||||||||||||| |||||||||||| || |||||||||||    
T  52440658 cttatgacatgttcataagttgttttcaactaattttcataag 52440700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 13804857 - 13804804
Alignment:
Q  204 gaacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||||||| || ||| |||||||| ||||||||| |||| ||||    
T  13804857 gaacaacttatgacatgtccataagctgttttcaacttattttcttaagttctc 13804804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 29771917 - 29771868
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    ||||||||| ||||||| || |||||||||||| ||||||| ||||||||    
T  29771917 aacaacttaggacatgtccataagttgttttcaacttatttccataagct 29771868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 41724291 - 41724250
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttatttt 246  Q
    ||||||||||||||||| || |||||||||||| ||||||||    
T  41724291 aacaacttatgacatgtccataagttgttttcagcttatttt 41724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 50952412 - 50952347
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttat 270  Q
    |||| ||||||||||||||| ||  |||||| | ||||||| ||||||||||| ||||| ||||||    
T  50952412 aacagcttatgacatgttcataaactgttttaagcttatttccataagctctccaagatagtttat 50952347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 5396289 - 5396229
Alignment:
Q  193 aagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    ||||| |||||||| || ||||||||||||| | ||| |||||||| ||||||||||||||    
T  5396289 aagaacttattgaaacagcttatgacatgttaataaggtgttttcagcttattttcataag 5396229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 15304339 - 15304383
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcata 250  Q
    ||||||||| ||||||||| ||| ||||| |||||||||||||||    
T  15304339 acaacttatcacatgttcataagctgtttgcatcttattttcata 15304383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 21574569 - 21574517
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||||||||| ||| || ||| | ||||||| |||||||||||    
T  21574569 aacaacttatgacatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 24281126 - 24281074
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||| || | || |||||||||||| |||| ||||||||||||||    
T  24281126 aacaacttatgatatctccataagttgttttcaacttactttcataagctctc 24281074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 33725867 - 33725935
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||||||||||| | | | ||||||||||||||||  ||||||| || | ||| |||||||||||    
T  33725867 caacttatgacatgttgatatgctgttttcatcttatttctataagctttccaggatagtttataaaaa 33725935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 36769985 - 36770017
Alignment:
Q  231 gttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||||||| ||||||||||||||||    
T  36769985 gttttcatcttatttttataagctctctaagat 36770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 51206489 - 51206541
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||| | | || |||||||||||| |||||||||||||||||||    
T  51206489 aacagcttatgacctatccaaaagttgttttcagcttattttcataagctctc 51206541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 10199404 - 10199454
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaa 260  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  10199404 cttatgacatgttcataagttgttttcagcttattttcataagctctctaa 10199454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 46252674 - 46252731
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||    
T  46252674 acaacttatgacatgttcataagttgttttcaggttattttcataagctctccaagat 46252731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 6292599 - 6292520
Alignment:
Q  178 tttgagactgtttgaaagaatttattgaacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||| ||||||  ||||||| |  |||| ||||||||||||||| ||| |||||||| |||||||||||||||||||    
T  6292599 tttgagattgtttgggagaatttttaaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctc 6292520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 4868504 - 4868430
Alignment:
Q  180 tgagactgtttgaaagaatttattgaacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    ||||||||||||| ||| |||||  |||||||||||||||||  | |||||||||||| ||||||| ||||||||    
T  4868504 tgagactgtttgagagagtttatgaaacaacttatgacatgtcaataagttgttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 37593676 - 37593726
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  37593676 acaacttatgacatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 275
Target Start/End: Original strand, 4700066 - 4700127
Alignment:
Q  214 tgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||| || ||||||||||| ||||||||||||||||||| | ||| |||||||||||    
T  4700066 tgacatgtttaggagttgttttcagcttattttcataagctctccaggatagtttataaaaa 4700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 5886990 - 5887051
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttata 271  Q
    ||||||||||||||| |||||||||||| ||||||||| |||| |||| ||||||| |||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagatggcttata 5887051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 31517731 - 31517788
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaaga 262  Q
    ||||||| |||||||||||| ||| |||||||| ||||||||||||||||||| ||||    
T  31517731 aacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 25479654 - 25479606
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    ||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataagctctcta 25479606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 8016333 - 8016278
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||| || ||||||||| ||||||||| ||||||||| |||||    
T  8016333 aacttatgacatgttcataacttgttttcagcttattttcctaagctctccaagat 8016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 4445813 - 4445735
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||  |||||||||  || || ||||| ||||||||||||| |||||||| |||||||||| ||||||||    
T  4445813 tgagactgtttgggagaatttatgaaagcagcttataacatgttcagaagctgttttcaacttattttcacaagctctc 4445735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 12641791 - 12641721
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||| ||| ||| ||||||  |||||||||||||||||||||||||||| ||||| ||| | |||||||||    
T  12641791 aacatcttgtgatatgttcgtaagttgttttcatcttattttcataagcactctaggatagattataaaaa 12641721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 27140557 - 27140487
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||| |||||||||||| || |||||||||||| ||||||| ||||||||||| | ||| | |||||||||    
T  27140557 aacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaa 27140487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 28689443 - 28689501
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||| |||||||||||| || |||||||||||| |||||||||||||||| || |||||    
T  28689443 aacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagat 28689501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 5276369 - 5276320
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| ||||||||||||  |||||||| |||||||||    
T  5276369 aacttatgacatgttcataagttgttttcaagttattttcttaagctctc 5276320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 10744380 - 10744323
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaaga 262  Q
    |||| |||||| |||||||| ||| ||||||||||||||||| ||||| |||||||||    
T  10744380 aacagcttatggcatgttcataagctgttttcatcttatttttataagttctctaaga 10744323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 34290373 - 34290268
Alignment:
Q  149 ctaattgaacttatctattagcataaacatt-tgagactgtttgaaagaatttattgaacaa-cttatgacatgttcagaagttgttttcatcttatttt 246  Q
    |||||||||||| |||| | |||||  |||| ||| ||| ||||  |||||||||| || || |||||||||| |||| |||||||||||| ||||||||    
T  34290373 ctaattgaacttttctacttgcataggcattgtgaaactatttgggagaatttattaaaaaagcttatgacatattcataagttgttttcagcttatttt 34290274  T
Q  247 cataag 252  Q
    ||||||    
T  34290273 cataag 34290268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 15361106 - 15361067
Alignment:
Q  218 atgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  15361106 atgttcataagttgttttcagcttattttcataagctctc 15361067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 38170681 - 38170732
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  38170681 aacagcttatgacatgttcataagttgttttcagcttgttttcctaagctct 38170732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 47877182 - 47877139
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||||||| ||| |||||||||||| ||||||||||||||||    
T  47877182 ttatgacatgctcataagttgttttcagcttattttcataagct 47877139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 3223746 - 3223697
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctc 255  Q
    |||||||||||||||||| | |||||||||||| |||| ||||||||||||    
T  3223746 aacaacttatgacatgtttataagttgttttcagctta-tttcataagctc 3223697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 3224498 - 3224448
Alignment:
Q  209 acttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    ||||||||||||| || |||||||| ||| |||||||||||||| ||||||    
T  3224498 acttatgacatgtccataagttgttctcagcttattttcataagttctcta 3224448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 11639407 - 11639461
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||| |||||||||||| || ||| |||||| | |||||||||||||||||||||    
T  11639407 aacagcttatgacatgtccataagctgtttttagcttattttcataagctctcta 11639461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 6262100 - 6262047
Alignment:
Q  204 gaacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||||||| ||| | |||||| ||||||| || ||||||||    
T  6262100 gaacaacttatgacatgttcataagctattttcaacttatttccacaagctctc 6262047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 7136994 - 7137047
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||| |||| ||||| |||||| |||||||||||||| |||| |||||    
T  7136994 cttatgacatattcataagttattttcagcttattttcataagttctccaagat 7137047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10854812 - 10854763
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||| ||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  10854812 aacagcttatgacatgttcacaagctgttttcagcttattttcttaagct 10854763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 28910064 - 28910023
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||||||| |||| | ||||||||||||||||||||||||||    
T  28910064 cttatgacttgtttataagttgttttcatcttattttcataa 28910023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 31294513 - 31294582
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||||||||  | || ||| | |||||| ||||||||||||||||||||| ||| ||||| |||||    
T  31294513 acaacttatgacacatccataagctcttttcaacttattttcataagctctctatgatagtttacaaaaa 31294582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 43722322 - 43722371
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||  | |||||||||| |||||||| ||||||||||    
T  43722322 aacttatgacatgttcttatgttgttttcagcttatttttataagctctc 43722371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 47917312 - 47917275
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  47917312 aacttatgacatgttcataagttgttttcaacttattt 47917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 4699606 - 4699658
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||||||||| ||| |||||| | |||||||  ||||||||||    
T  4699606 aacaacttatgacatgttcataagctgtttttagcttatttctataagctctc 4699658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 7218069 - 7218117
Alignment:
Q  209 acttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||| ||||| ||| |||||||| |||||||||||||| ||||    
T  7218069 acttatgacacgttcacaagctgttttcaacttattttcataagttctc 7218117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 15687082 - 15687130
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctct 258  Q
    |||||||||||| || || ||||||||| |||||| |||||||||||||    
T  15687082 cttatgacatgtccataaattgttttcagcttattgtcataagctctct 15687130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 19412588 - 19412652
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggttta 269  Q
    ||||||||||||||||| || ||| || |||   ||||||| |||||||| ||||||||||||||    
T  19412588 aacaacttatgacatgtccataagctgattttggcttatttccataagctttctaagatggttta 19412652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 35925769 - 35925717
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||||||| ||| |||||||| ||||||| ||||| |||||    
T  35925769 aacagcttatgacatgttcataagctgttttcaacttatttccataaactctc 35925717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 38503470 - 38503514
Alignment:
Q  219 tgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||| |||||||||||| |||||||||||||| |||| |||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagat 38503514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 779052 - 779122
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||||||||||||||| |||||||||||||||||||||  ||  ||||| ||||| |||||| ||||    
T  779052 aacaacttatgacatgttcataagttgttttcatcttattttggtacactctccaagatagtttatgaaaa 779122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 4281625 - 4281579
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  4281625 aacaacatatgacatgttcataagttgttttcatcttattttcataa 4281579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 41606894 - 41606948
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  41606894 aacagcttatgacatgttcaaaagttgttttcagcttatttccataagctctcta 41606948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 20672824 - 20672759
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||| | ||| | |||||||||    
T  20672824 cttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaa 20672759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 2594988 - 2595035
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||    
T  2594988 aacaacttatgacatgttcataagttgttttcagcttattctcataag 2595035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 13000389 - 13000464
Alignment:
Q  180 tgagactgtttgaaagaatttattg-aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    ||||||| |||| |||| ||||| | ||||||||||||||||| || |||||||||||| ||||||| ||||||||    
T  13000389 tgagactatttgcaagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttccataagct 13000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 30389170 - 30389124
Alignment:
Q  213 atgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||    
T  30389170 atgacatgttcataagttgttttcagcttattttcataagttctcta 30389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 21653158 - 21653102
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||| ||||| ||| | |||||| ||||||||||||||||||| |||||    
T  21653158 caacttatgacacgttcataagctattttcagcttattttcataagctctccaagat 21653102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 9700074 - 9700027
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctct 258  Q
    ||||||||||| || ||| |||||||| ||||||||||||||||||||    
T  9700074 ttatgacatgtccataagctgttttcaccttattttcataagctctct 9700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 9835891 - 9835938
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    |||| ||||||||||||||| ||| |||||||||||||||| ||||||    
T  9835891 aacagcttatgacatgttcataagctgttttcatcttatttccataag 9835938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 12132908 - 12132865
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||    
T  12132908 ttatgatatgtgcagaagttgttttcaacttattttcataagct 12132865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 42215084 - 42215131
Alignment:
Q  216 acatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||| |||||||||||| ||||||| ||||||||||| |||||    
T  42215084 acatgttcataagttgttttcagcttatttacataagctctccaagat 42215131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 3600735 - 3600777
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagc 253  Q
    ||||||||||| || |||||||||||| |||||||||||||||    
T  3600735 ttatgacatgtccataagttgttttcaacttattttcataagc 3600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 14339602 - 14339644
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagc 253  Q
    ||||||||||| || |||||||||||| |||||||||||||||    
T  14339602 ttatgacatgtccataagttgttttcaacttattttcataagc 14339644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 30191132 - 30191178
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||||||||||||||||||| || ||||||||| ||||||| |||||    
T  30191132 aacaacttatgacatgttcaaaacttgttttcagcttatttccataa 30191178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 32840976 - 32841022
Alignment:
Q  205 aacaacttatgacat-gttcagaagttgttttcatcttattttcata 250  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  32840976 aacaacttatgacattgttcataagttgttttcagcttattttcata 32841022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 39551178 - 39551252
Alignment:
Q  184 actgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||  ||||||||| ||| ||||||||||||||| || ||| |||||| | |||||||| ||||||||||    
T  39551178 actgtttgggagaatttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctc 39551252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 25869260 - 25869309
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||| || |||||||||||| ||||||| ||||| |||||    
T  25869260 aacttatgacatgtccataagttgttttcagcttatttccataaactctc 25869309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 30918191 - 30918135
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaaga 262  Q
    |||||||| |||||| |||| |||||||||||| ||||||| ||||||||||| ||||    
T  30918191 aacaacttgtgacat-ttcataagttgttttcagcttatttccataagctctccaaga 30918135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 37822624 - 37822700
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||| | |||||||| || ||| |||||| |||||   |||||||||||| ||||||||||||||||||    
T  37822624 tgagactgtttgagaaaatttattaaaacaatttatgatatgtttgtaagttgttttca-cttattttcataagctct 37822700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 11185300 - 11185248
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||| ||||||||| |||||||||||| ||||||| ||| |||||||    
T  11185300 aacatcttataacatgttcataagttgttttcaacttatttccatcagctctc 11185248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 11569448 - 11569500
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||||||| || |||||||||||| |||||||||| || |||||    
T  11569448 aacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctc 11569500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 12851255 - 12851203
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||| ||||||||| ||| |||||||  |||||||||||||||||||    
T  12851255 aacagcttataacatgttcataagatgttttcggcttattttcataagctctc 12851203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 31862570 - 31862518
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    ||||||||||| | | || ||| |||||||| |||||||||||||||||||||    
T  31862570 caacttatgacctatgcataagctgttttcagcttattttcataagctctcta 31862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 31875586 - 31875650
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggttta 269  Q
    ||||||||||||||||| || |||   |||||| ||||||||||||||||||  ||||| |||||    
T  31875586 aacaacttatgacatgtccataagccattttcaacttattttcataagctcttgaagatagttta 31875650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 42215297 - 42215349
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||| |||||| ||| |||||||| ||||||| |||||||||||    
T  42215297 aacagcttatgacttgttcataagctgttttcagcttatttacataagctctc 42215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 41809236 - 41809294
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||||||||||| |||||||||| | ||||||| |||||||| ||||||||    
T  41809236 aacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagat 41809294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 33942228 - 33942159
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||||||||||||| ||| |||||||| || |||||||| ||||||||| ||||| |||| ||||    
T  33942228 acaacttatgacatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaa 33942159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 14666627 - 14666579
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagc 253  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||    
T  14666627 aacaacttatgacatgttcataggttgttttcaccttattttcataagc 14666579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 1056120 - 1056171
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||||||||  ||||||||||| ||| ||||||||||||||    
T  1056120 aacaacttatgacatgttcattagttgttttcagcttgttttcataagctct 1056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 15120332 - 15120210
Alignment:
Q  138 tttgaattgacctaattgaacttatctattagcataaacatttgaga--ctgtttgaaagaatttattg-aacaacttatgacatgttcagaagttgttt 234  Q
    |||| |||||| || ||||||||||||| ||||||||||| ||| ||  |||||||  |||  |||| | ||||||||||||||||||||  || |||||    
T  15120332 tttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttatgacatgttcattagctgttt 15120233  T
Q  235 tcatcttattttcataagctctc 257  Q
    | | |||||||| ||||||||||    
T  15120232 taagcttattttgataagctctc 15120210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 34652027 - 34652098
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaaa 276  Q
    ||||||||||||||||| || ||| |||||||| ||||||| ||||||||||| ||||| | |||| |||||    
T  34652027 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaaa 34652098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 12313164 - 12313222
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||| |||||| |||||||| |||||| ||||| ||||||||||||||||||| |||||    
T  12313164 aacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagat 12313222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 35379015 - 35379065
Alignment:
Q  213 atgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||| |||||    
T  35379015 atgacttgttcataagttgttttcagcttattttcataagctctccaagat 35379065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 1939323 - 1939375
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| || ||| |||||||| ||||||| |||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctc 1939375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 7283075 - 7283023
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||| |||| || |||||||||||||||||| | |||||||||||    
T  7283075 aacaacttatgatatgtccataagttgttttcatcttatatccataagctctc 7283023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 16867812 - 16867760
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||| |||||    
T  16867812 ttatgacatattcataagttgttttcaacttatttccataagctctccaagat 16867760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 44443394 - 44443342
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||| ||||||| |||||||||||| |||||||||||| |||||| |||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagat 44443342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 9174895 - 9174836
Alignment:
Q  205 aacaacttatgacat-gttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||| ||||| ||| | |||||| |||||||||||||||||| ||||||    
T  9174895 aacaacttatgacattgttcataagctattttcagcttattttcataagctctgtaagat 9174836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Original strand, 32364727 - 32364786
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggttta 269  Q
    |||||||| ||| ||  ||||||||||| |||||||||||||| |||||||||| |||||    
T  32364727 cttatgacgtgtccatgagttgttttcagcttattttcataagatctctaagatagttta 32364786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 43910993 - 43911048
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||| |||||||||||| |||||| ||| ||||| || |||||    
T  43910993 aacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagat 43911048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 44606101 - 44606148
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    ||||||||||||||||| || |||||||||||| || |||||||||||    
T  44606101 aacaacttatgacatgtccataagttgttttcagctgattttcataag 44606148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 1647315 - 1647261
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||| ||||||||||| ||| ||| |||||||| ||||||| |||||||||||||    
T  1647315 aacagcttatgacatgctcataagctgttttcagcttatttccataagctctcta 1647261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 29316766 - 29316824
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||| ||||||||||||||| ||||| |||||| ||||||| |||||| |||| |||||    
T  29316766 aacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagat 29316824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 41817247 - 41817177
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||| ||||||||||||| | || ||||||||| ||||||| ||||||||||| | ||| |||||| ||||    
T  41817247 aacatcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaaa 41817177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 264
Target Start/End: Original strand, 43529779 - 43529908
Alignment:
Q  138 tttgaattgacctaattgaacttatctattagcataaacattt--gagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttt 234  Q
    ||||||||||| || |||| |||||||||| | |||| || ||  || ||||||||  |||||||||  || || |||||| |||||||| ||| | |||    
T  43529779 tttgaattgacttatttgagcttatctattggtataagcacttctgacactgtttgggagaatttatgaaaacagcttatgccatgttcataagctattt 43529878  T
Q  235 tcatcttattttcataagctctctaagatg 264  Q
    |||  |||||||||||||||||||| ||||    
T  43529879 tcagtttattttcataagctctctaggatg 43529908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 12147531 - 12147466
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||||||||| || |||||||||  ||||||||||||||| || |  || |||||||||||    
T  12147531 cttatgacatgttcataaattgttttcagtttattttcataagctatccagaatagtttataaaaa 12147466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 43199776 - 43199833
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||| ||||||||| | |||||||||||| |||| |||||||||| ||| |||||    
T  43199776 acaacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagat 43199833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 7928304 - 7928348
Alignment:
Q  219 tgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||| |||||||||||| |||||||||||||| |||| |||||    
T  7928304 tgttcataagttgttttcagcttattttcataagttctccaagat 7928348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 10567136 - 10567084
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||| ||| |||||||||||| || ||||||| ||||||||    
T  10567136 aacagcttatgacatgatcataagttgttttcagctaattttcacaagctctc 10567084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 18840854 - 18840818
Alignment:
Q  226 aagttgttttcatcttattttcataagctctctaaga 262  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  18840854 aagttgttttcatcttatttccataagctctccaaga 18840818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 28677650 - 28677702
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||||| |||| |||||||||||  ||||||| |||||||||||    
T  28677650 aacagcttatgacattttcataagttgttttcggcttatttccataagctctc 28677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 30538164 - 30538204
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||||||||||||||| || |||||||||||| |||||||    
T  30538164 aacaacttatgacatgtccataagttgttttcagcttattt 30538204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 40158797 - 40158745
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||||| | |||||||||||| |||| || |||||||||||    
T  40158797 aacagcttatgacatgtttataagttgttttcagcttaattacataagctctc 40158745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 40682390 - 40682438
Alignment:
Q  210 cttatgacat-gttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||| ||||| |||||||||||| |||||||||||||| ||||    
T  40682390 cttatgacattgttcataagttgttttcaacttattttcataagttctc 40682438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 43065441 - 43065493
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||| || || ||||||||| |||||||  ||||||||||    
T  43065441 aacaacttatgacatgtccataaattgttttcagcttatttcaataagctctc 43065493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 7244759 - 7244707
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||| |||||||||| ||| |||||||||||| |||||||||||||||||||    
T  7244759 aacaatttatgacatgctcataagttgttttcagcttattttcataagctctc 7244707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 46082115 - 46082063
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||||||  || |||||||||||| |||||||||||||||||||    
T  46082115 aacaacttatgacatgaccataagttgttttcagcttattttcataagctctc 46082063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 248
Target Start/End: Complemental strand, 24967195 - 24967097
Alignment:
Q  153 ttgaacttatctattagcataaacattt--gagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttca 248  Q
    |||| |||||||| ||| ||||||||||  ||||||||||| ||||  |||| ||| |||||||| |||| | ||||||||||||||| ||||||||||    
T  24967195 ttgagcttatctactagtataaacatttatgagactgtttggaagagattatggaaacaacttataacatatccagaagttgttttcagcttattttca 24967097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 22551396 - 22551454
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||| ||||||||||||||| | |||||||||| ||||||| ||||||||||| |||||    
T  22551396 aacagcttatgacatgttcaaatgttgttttcagcttatttacataagctctccaagat 22551454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 25670577 - 25670635
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||||||||| | || ||||||||| |||||||||| |||||||| |||||    
T  25670577 aacaacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagat 25670635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 47134748 - 47134797
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||||||||||| || || |||||||||||| ||||||||||||||||    
T  47134748 aacaacttatgacacgtccataagttgttttcagcttattttcataagct 47134797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 21248002 - 21247946
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttca-taagctctctaagat 263  Q
    ||||||||||||||||| |||||||||| | |||||||||| ||||||||| |||||    
T  21248002 aacttatgacatgttcataagttgttttaagcttattttcagtaagctctccaagat 21247946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 529451 - 529396
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||| ||||| ||| |||||||| | ||||||||||||||||| |||||    
T  529451 aacttatgacaagttcataagctgttttcaacatattttcataagctctccaagat 529396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 11048106 - 11048059
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    |||||||||||||||||||| ||| |||||||| |||||| |||||||    
T  11048106 aacaacttatgacatgttcataagctgttttcagcttattctcataag 11048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 23215004 - 23214882
Alignment:
Q  138 tttgaattgacctaattgaacttatctattagcataaaca--tttgagactgtttgaaagaatttat-tgaacaacttatgacatgttcagaagttgttt 234  Q
    |||| |||||| || |||| |||||||| |||||||||||  | ||||||||||||| |||||||||   ||||||||||||||| | || ||| | | |    
T  23215004 tttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagctctat 23214905  T
Q  235 tcatcttattttcataagctctc 257  Q
    ||| ||||| |||||||| ||||    
T  23214904 tcagcttatgttcataagatctc 23214882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 12234880 - 12234934
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||||||||||||||||  | ||| |||||||| ||||||| |||||||||||||    
T  12234880 aacaacttatgacatgtctataagctgttttcagcttatttccataagctctcta 12234934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 15740402 - 15740448
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataa 251  Q
    |||||||||||||||||||| ||| |||||| | |||||||||||||    
T  15740402 aacaacttatgacatgttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 25596112 - 25596054
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||| ||||||||| |||   |||||||||||| ||||||||||||||||||| |||||    
T  25596112 aacagcttatgacaagttactaagttgttttcaacttattttcataagctctccaagat 25596054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 22283760 - 22283805
Alignment:
Q  230 tgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||| ||||||| |||||| ||||||||||||||||| ||||    
T  22283760 tgttttcagcttatttccataagttctctaagatggtttatgaaaa 22283805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 35267436 - 35267383
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||| | |||||||||| |||||||  |||||||||| |||||    
T  35267436 cttatgacatgttcataggttgttttcagcttatttctataagctctccaagat 35267383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 36538013 - 36537944
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttca 248  Q
    ||||| ||||||| |||| |||| ||| |||||||||||||||||| |||||||||| | ||| ||||||    
T  36538013 tgagattgtttgagagaacttatggaaacaacttatgacatgttcataagttgtttttagctttttttca 36537944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 9423585 - 9423625
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||| |||||||||||||| |||||||||||| |||||||    
T  9423585 aacaatttatgacatgttcataagttgttttcagcttattt 9423625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 20888385 - 20888425
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  20888385 aacaacttatgccatgttcataagttgttttcagcttattt 20888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 34035994 - 34035938
Alignment:
Q  208 aacttatgacat-gttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||| ||||| |||||||||||| |||||||||  ||| ||||||||||    
T  34035994 aacttatgacattgttcataagttgttttcaacttattttcgcaagttctctaagat 34035938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 39360128 - 39360052
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctc 255  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||| | || |||||| ||||| |||||||  ||||||||    
T  39360128 tgagactgtttgatagagtttatggaaacaacttatgacatatccataagttgctttcagcttatttcaataagctc 39360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 43250690 - 43250742
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||||||  ||||||||||||  |||| |||||||||||||    
T  43250690 aacagcttatgacatgttcgtaagttgttttcagtttatattcataagctctc 43250742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 10125709 - 10125761
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||||||||| | ||| |||||||| |||||||||||||||||||    
T  10125709 aacaacttatgacatgttgataaggtgttttcagcttattttcataagctctc 10125761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 41957442 - 41957494
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||||||| || ||||||||||||||||||||||||||| ||||    
T  41957442 aacagcttatgacatgtccataagttgttttcatcttattttcataagttctc 41957494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 10272422 - 10272492
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    |||||||||||||||||    |||||||||||| ||||||||||||| ||||| ||||||| |||| ||||    
T  10272422 aacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaa 10272492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 17258879 - 17258925
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  17258879 cttatgacatgttcataagctgttttcagcttattttcataagctct 17258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 12467212 - 12467163
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  12467212 aacaacttatgacatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 33533536 - 33533588
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||| |||| |||||||||||| ||||||| ||||||||||| |||||    
T  33533536 ttatgacatattcataagttgttttcaacttatttccataagctctccaagat 33533588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 12459992 - 12460043
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||||||||||| | ||||||||   ||||||||||||||||||    
T  12459992 aacaacttatgacatgttcatatgttgtttttggcttattttcataagctct 12460043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 13604840 - 13604891
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||| |||||||||||| || | |||||||||| ||||||||||||||||||    
T  13604840 aacagcttatgacatgtccatacgttgttttcaacttattttcataagctct 13604891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 36639596 - 36639550
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||| ||| || ||||||||||| |||||||||||||||||||    
T  36639596 cttatgacgtgtccataagttgttttcctcttattttcataagctct 36639550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 37611206 - 37611264
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||| ||||||||||| ||| ||||||||  |||||| ||||||||||| |||||    
T  37611206 aacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagat 37611264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 37787936 - 37787994
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||| ||||||||||| ||| ||||||||  |||||| ||||||||||| |||||    
T  37787936 aacaacttgtgacatgttcataagctgttttcaggttatttccataagctctccaagat 37787994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 7674753 - 7674684
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttca 248  Q
    |||||||| ||| ||||| |||| ||| |||||||||||||||| | ||| |||||||| ||||||||||    
T  7674753 tgagactgcttggaagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttattttca 7674684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 11707128 - 11707083
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||||||||||| | |||||||||||| |||||||||| |||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctct 11707083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 38104869 - 38104906
Alignment:
Q  226 aagttgttttcatcttattttcataagctctctaagat 263  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  38104869 aagttgttttcagcttatttccataagctctctaagat 38104906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 499722 - 499774
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||||||||| | |||||||||||| ||||||| ||||| |||||    
T  499722 aacagcttatgacatgttaacaagttgttttcagcttatttccataaactctc 499774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 1550977 - 1550925
Alignment:
Q  204 gaacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||||||  | |  |||||||||||||||| |||||||||||    
T  1550977 gaacaacttatgacatgtatatatattgttttcatcttattgtcataagctct 1550925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 8177523 - 8177575
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| ||||||| |||| || ||||||||||||  ||||||||||||||||||    
T  8177523 aacagcttatgatatgtccataagttgttttcaggttattttcataagctctc 8177575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 14331446 - 14331394
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||| |||||||||||| || ||| || ||||| |||||||||||||||||||    
T  14331446 aacagcttatgacatgtccataagctgatttcagcttattttcataagctctc 14331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 40534273 - 40534225
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagctctct 258  Q
    ||||||||||||||| || | |||||||||||| || ||||||||||||    
T  40534273 cttatgacatgttcataattagttttcatcttacttccataagctctct 40534225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 42100386 - 42100338
Alignment:
Q  210 cttatgacat-gttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||| ||||    
T  42100386 cttatgacatagttcaaaaggtgttttcatcttattttcataagttctc 42100338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 12695 - 12753
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||| || |||||||||||| ||||  | |||||||||||||||||    
T  12695 aacaacttatgacatgtccataagttgttttcagcttagctccataagctctctaagat 12753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 4926 - 4978
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||| ||||||||| |||||||||||| ||||  | |||||||||||    
T  4926 aacaacttataacatgttcataagttgttttcagcttaactccataagctctc 4978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 1137791 - 1137738
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctct 258  Q
    |||| ||||||||||||||| ||||||||||||  |||||| ||||||||||||    
T  1137791 aacatcttatgacatgttcataagttgttttcagtttatttccataagctctct 1137738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 40532585 - 40532642
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaaga 262  Q
    |||||||||| | ||||||| |||||||||||||||||||||| || |||||| ||||    
T  40532585 aacaacttattatatgttcataagttgttttcatcttattttcgtaggctctccaaga 40532642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 275
Target Start/End: Original strand, 6978931 - 6979023
Alignment:
Q  184 actgtttgaaagaatttattgaac-aacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||  |||| ||||||||  ||||||||||||||  | ||| |||||||| ||||||||||||| |||| || ||||| |||||||||    
T  6978931 actgtttggcagaacttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaaa 6979023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 11264378 - 11264310
Alignment:
Q  207 caacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttataaaaa 275  Q
    ||||||||||||||| || ||  |||||||| ||||||| ||||||||||||| ||||| |||| ||||    
T  11264378 caacttatgacatgtccataaactgttttcaacttatttccataagctctctaggatggcttatgaaaa 11264310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 28300297 - 28300341
Alignment:
Q  212 tatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||    
T  28300297 tatgacatgttcttaagttgttttcaacttattttcataagctct 28300341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 46019623 - 46019671
Alignment:
Q  208 aacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||||||||||| | |||||||||||| ||||| ||||||||||||    
T  46019623 aacttatgacatgttgataagttgttttcaacttatattcataagctct 46019671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 23819168 - 23819117
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctct 256  Q
    |||| |||||||||||| || ||||||||||||||||||||  |||||||||    
T  23819168 aacagcttatgacatgtccataagttgttttcatcttatttctataagctct 23819117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 55084483 - 55084530
Alignment:
Q  216 acatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||| ||| || ||||| |||||||||||||||||||||||||    
T  55084483 acatgttcataagctggtttcagcttattttcataagctctctaagat 55084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 2996652 - 2996594
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||| || ||| | |||||| |||||||||||| |||||| |||||    
T  2996652 aacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagat 2996594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 24929572 - 24929518
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||| |||||| |||||||| || ||||||||| ||||||| |||||||||||||    
T  24929572 aacagcttatggcatgttcataaattgttttcagcttatttccataagctctcta 24929518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 257
Target Start/End: Original strand, 27123317 - 27123395
Alignment:
Q  180 tgagactgtttgaaagaatttattgaa-caacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||| |||  |||| ||| |||||||||||||||    |||||||||||| ||||||| |||||||||||    
T  27123317 tgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctc 27123395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 256
Target Start/End: Complemental strand, 47146028 - 47145990
Alignment:
Q  218 atgttcagaagttgttttcatcttattttcataagctct 256  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  47146028 atgttcataagttgttttcaccttattttcataagctct 47145990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 24747390 - 24747353
Alignment:
Q  213 atgacatgttcagaagttgttttcatcttattttcata 250  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  24747390 atgacatgttcataagttgttttcagcttattttcata 24747353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 29556989 - 29557030
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataag 252  Q
    |||||| ||||  |||||||||||||||||||||||||||||    
T  29556989 ttatgatatgtgtagaagttgttttcatcttattttcataag 29557030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 44249364 - 44249299
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagatggtttat 270  Q
    |||| ||||||||||||| | ||||| | |||| ||||||||||||| ||||| ||||| ||||||    
T  44249364 aacagcttatgacatgttgataagttttcttcagcttattttcataaactctccaagatagtttat 44249299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Complemental strand, 46401342 - 46401286
Alignment:
Q  206 acaacttatgacatgttcagaagttgttttcatcttattttcataagctctctaagat 263  Q
    ||||||||||||||||||| ||||||| |||| |||| ||| |||||||||| |||||    
T  46401342 acaacttatgacatgttcataagttgtattcagctta-tttaataagctctccaagat 46401286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 53792629 - 53792584
Alignment:
Q  226 aagttgttttcatcttattttcataagctctctaagatggtttata 271  Q
    |||||||||||| ||||||||||||| ||||| ||||| |||||||    
T  53792629 aagttgttttcagcttattttcataaactctccaagatagtttata 53792584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 488117 - 488157
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattt 245  Q
    ||||||||||||||||| || ||| ||||||||||||||||    
T  488117 aacaacttatgacatgtgcataagctgttttcatcttattt 488157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 7694009 - 7694053
Alignment:
Q  213 atgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||| |||||||||||| ||||||| ||||| |||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctc 7694053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 8469374 - 8469422
Alignment:
Q  211 ttatgacatgttcagaagttgttttcatcttattttcataagctctcta 259  Q
    |||||||||||||| |||||||||||| ||||||| |||| | ||||||    
T  8469374 ttatgacatgttcataagttgttttcagcttatttccataggttctcta 8469422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 20936220 - 20936272
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    |||||||||||| ||||||| ||| |||||||| ||||||| ||||| |||||    
T  20936220 aacaacttatgatatgttcataagctgttttcaccttatttccataatctctc 20936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 28232624 - 28232572
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||||||||||| | || | |||||||||||||||||||| || ||||||||    
T  28232624 aacaacttatgacttatttataagttgttttcatcttatttccacaagctctc 28232572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 33534160 - 33534212
Alignment:
Q  205 aacaacttatgacatgttcagaagttgttttcatcttattttcataagctctc 257  Q
    ||||| || |||||| | || |||||||||||| |||||||||||||||||||    
T  33534160 aacaaattgtgacatatccataagttgttttcagcttattttcataagctctc 33534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 43824357 - 43824313
Alignment:
Q  210 cttatgacatgttcagaagttgttttcatcttattttcataagct 254  Q
    |||||| |||||||| |||||||||||| ||||||| ||||||||    
T  43824357 cttatggcatgttcataagttgttttcagcttatttccataagct 43824313  T

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