View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12050_low_21 (Length: 282)

Name: NF12050_low_21
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12050_low_21
NF12050_low_21
[»] chr8 (2 HSPs)
chr8 (94-265)||(41488529-41488703)
chr8 (18-96)||(40278490-40278568)
[»] chr2 (2 HSPs)
chr2 (18-94)||(39375513-39375589)
chr2 (200-265)||(34414297-34414362)
[»] chr5 (3 HSPs)
chr5 (18-78)||(4925324-4925384)
chr5 (18-94)||(35205867-35205943)
chr5 (18-73)||(35211228-35211283)
[»] chr1 (4 HSPs)
chr1 (18-94)||(7386534-7386610)
chr1 (18-74)||(19991215-19991271)
chr1 (177-260)||(29081597-29081680)
chr1 (18-75)||(19322649-19322706)
[»] chr4 (2 HSPs)
chr4 (18-73)||(48265336-48265391)
chr4 (18-72)||(23563635-23563689)
[»] chr3 (2 HSPs)
chr3 (18-101)||(53464983-53465066)
chr3 (18-94)||(52314573-52314649)
[»] chr6 (1 HSPs)
chr6 (179-260)||(20408361-20408442)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 41488529 - 41488703
Alignment:
Q  94 taaatagctatttctcttgaatgattgaactatttctttgagagcaactggaaataggnnnnnnnnnnnnnn--gagggaagcaacgg-gaacaggttaa 190  Q
    |||||| ||||||||||| |||||||||||||||| |||||||||||||||||| |||                |||||||||||| | ||||||||||     
T  41488529 taaatatctatttctcttaaatgattgaactatttatttgagagcaactggaaacaggttttttttttttttttgagggaagcaaccgagaacaggttac 41488628  T
Q  191 tttctttaaaatttgcgtttagataaatacattcattaagtacaaattgaaacatattaaatggtaatatctgtg 265  Q
    |||||||||||||| |||||||||||||||||||| ||| |  ||||| |||||||||||||| |||||||||||    
T  41488629 tttctttaaaatttacgtttagataaatacattcaataaatctaaattaaaacatattaaatgttaatatctgtg 41488703  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 40278568 - 40278490
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctctaa 96  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||| |||||||||  ||||| || ||||||||||||    
T  40278568 aattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcgatgtgtatgctctaa 40278490  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 39375589 - 39375513
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctct 94  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  39375589 aattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctct 39375513  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 34414297 - 34414362
Alignment:
Q  200 aatttgcgtttagataaatacattcattaagtacaaattgaaacatattaaatggtaatatctgtg 265  Q
    |||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |||||||||||    
T  34414297 aatttgcgcttagataaatacattcaataagttcaaattgaaaaatattaaatgctaatatctgtg 34414362  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4925324 - 4925384
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacag 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4925324 aattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacag 4925384  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 35205867 - 35205943
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctct 94  Q
    |||||| |||||| ||||||||||| |||||||| || |||||||| |||||||||  ||||| || || |||||||    
T  35205867 aattattcatgatcttatgacacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctct 35205943  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 35211283 - 35211228
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatg 73  Q
    |||||| |||||| ||||||||||| |||||||| || |||||||| |||||||||    
T  35211283 aattattcatgatcttatgacacaaaagcattgggtaatgtgataccacccatatg 35211228  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7386534 - 7386610
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctct 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| || ||||||||||    
T  7386534 aattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctct 7386610  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 19991271 - 19991215
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatgg 74  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||| ||||||||||    
T  19991271 aattatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 29081680 - 29081597
Alignment:
Q  177 cgggaacaggttaatttctttaaaatttgcgtttagataaatacattcattaagtacaaattgaaacatattaaatggtaatat 260  Q
    |||||||| | ||| ||||| | |||||||| ||||| |||||| |||| |||||  |||||||||||||||||||| ||||||    
T  29081680 cgggaacaagctaacttcttcagaatttgcgcttagacaaatacgttcaataagtctaaattgaaacatattaaatgctaatat 29081597  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 19322706 - 19322649
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatgga 75  Q
    |||||| |||||||||||||||||||| | ||||||| ||| |||| |||||||||||    
T  19322706 aattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 48265336 - 48265391
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatg 73  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||| |||||||||    
T  48265336 aattatccatgatcttatgacacaaaagcattggacagtgtgataccacccatatg 48265391  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 23563635 - 23563689
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatat 72  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||||| ||||||||    
T  23563635 aattatccatgatcttatgacacaaaagcattgggcagtgtgataccacccatat 23563689  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 53464983 - 53465066
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctctaaatagc 101  Q
    |||||| |||||| ||||||||||| ||||||||  | |||||||| |||||||||  ||||| || || ||||||||| ||||    
T  53464983 aattattcatgatcttatgacacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctaagtagc 53465066  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 52314573 - 52314649
Alignment:
Q  18 aattatccatgatattatgacacaagagcattggttagtgtgatactacccatatggacaggcaatatgtatgctct 94  Q
    |||||| |||||| ||||||||||| ||||||||  | |||||||| |||||||||  ||||| || || |||||||    
T  52314573 aattattcatgatcttatgacacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 52314649  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 20408442 - 20408361
Alignment:
Q  179 ggaacaggttaatttctttaaaatttgcgtttagataaatacattcattaagtacaaattgaaacatattaaatggtaatat 260  Q
    |||||||| ||||||| | |||||||||  ||||||||||||||| |  |||| ||||||| ||||| || |||| ||||||    
T  20408442 ggaacaggctaatttcatcaaaatttgcacttagataaatacattgaacaagtccaaattggaacatgttgaatgctaatat 20408361  T

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