View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12050_low_29 (Length: 234)
Name: NF12050_low_29
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 39238488 - 39238274
Alignment:
| Q |
16 |
aaaattaaaaaactcgaaatcaaaatccaaattttgcaagcacacaaatcatcaccaactagagattagttgttgcggcgacatagggtaatcccatcag |
115 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
39238488 |
aaaattgaaaaactcgaaataaaaatccaaatcttgcaagcacacaaatcatcaccaactagagattacttgatgcggcgacatagggtaatcccatcag |
39238389 |
T |
|
| Q |
116 |
ctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcatagg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39238388 |
ctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcatagg |
39238289 |
T |
|
| Q |
216 |
tgcatcaggtggagc |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39238288 |
tgcatcaggtggagc |
39238274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 39050059 - 39049948
Alignment:
| Q |
89 |
tgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacg |
188 |
Q |
| |
|
|||| ||||||| |||||| |||||| ||| || ||||||||||| ||||| ||| |||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
39050059 |
tgcgacgacataaggtaattccatcacctaccgaaagctgacaaatttcaatccttaaatcttgagctaaatacttgttgaactcaatcacataaccacg |
39049960 |
T |
|
| Q |
189 |
taaattcctaat |
200 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39049959 |
taaattcataat |
39049948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 39290986 - 39291105
Alignment:
| Q |
80 |
attagttgttgcggcgacatagggtaatcccatcagctatagatagctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcac |
179 |
Q |
| |
|
||||| || ||||||| ||||| ||||| ||||| ||| || || ||||| |||| ||| ||| |||| || |||| |||||| || ||||||||||| |
|
|
| T |
39290986 |
attagatgatgcggcggcatagagtaattccatcgcctactgagagttgacagatctgaatccttaaatcctgggctaaatgtttgttaaactcaatcac |
39291085 |
T |
|
| Q |
180 |
ataaccacgtaaattcctaa |
199 |
Q |
| |
|
|| |||||| |||||||||| |
|
|
| T |
39291086 |
atgaccacgaaaattcctaa |
39291105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 39056102 - 39056004
Alignment:
| Q |
124 |
agctgacaaatctcaattcttgaatcttgagctagatgtttattgaactcaatcacataaccacgtaaattcctaatgaaatccatcataggtgcatca |
222 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| || ||| || | ||||||||||| |||||||||| ||| |||||||| |||||| |||||| |
|
|
| T |
39056102 |
agctgacaaatctcgacccttgaatctttagctaaatatttgttaagctcaatcacatgaccacgtaaacgtttaacgaaatccagcataggagcatca |
39056004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University