View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_3 (Length: 546)
Name: NF12050_low_3
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 2745401 - 2744855
Alignment:
| Q |
1 |
atatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctacttgtgtcacagttgatagaaaccatggactgcatttattttcttc |
100 |
Q |
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| T |
2745401 |
atatagtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctacttgtgtcacagttgatagaaaccatggactgcatttattttcttc |
2745302 |
T |
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| Q |
101 |
catttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaaaattaggttaaattccattagtgacaattcatcatcaaaattga |
200 |
Q |
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| T |
2745301 |
catttgcttcaaatcttttggtgtaataaatgctgctttatctaaaaacctagcaaaattaggttaaattccattagtgacaattcatcatcaaaattga |
2745202 |
T |
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| Q |
201 |
acctatacaaaacataataatcaagactaaaatataaagccatgtgattattttatgcaatcatataacaattatacaacctatgatcttgacnnnnnnn |
300 |
Q |
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| T |
2745201 |
acctatacaaaacataataatcaagactaaaatataaagtcatgtgattattttaagcaatcatataacaattatacaacctatgatcttgactatatat |
2745102 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnntgttctatgttcaagatttttcattttcagcatcatataag-aaattcatatcattgtgttacatatacggattaaaatcata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
2745101 |
acatatatatgatatattgttctatgttcaagatttttcattttcagcatcatataagaaaattcatatcattgtgttacatatacgaattaaaatcata |
2745002 |
T |
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| Q |
400 |
tatagttttaaatcgagttcacaaacatacaataacgattttagatgtctttgcaatcacatcacaaatgcaattgtagccgcatcgaccatattcgttt |
499 |
Q |
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| T |
2745001 |
tatagttttaaatcgagttcacaaacatacaataacgattttagatgtctttgcaatcacatcacaaatgcaattgtagccgcatcaaccatatttgttt |
2744902 |
T |
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| Q |
500 |
gtattttacttcaatataaaggttttccgcgtaactgtaacttcact |
546 |
Q |
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| T |
2744901 |
gtattttacttcaatataaaggttttccacgtaactgtaacttcact |
2744855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 8469791 - 8469730
Alignment:
| Q |
6 |
gtgcataaccaaattgggagtaatcttaatatgcatttcacttcttctacttgtgtcacagt |
67 |
Q |
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||||||||||||| ||| | || ||| || || |||||||||||||| |||||||||||||| |
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| T |
8469791 |
gtgcataaccaaactggcaatagtctcaaaatacatttcacttcttcaacttgtgtcacagt |
8469730 |
T |
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