View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_31 (Length: 223)
Name: NF12050_low_31
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_31 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 11202852 - 11203043
Alignment:
| Q |
18 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgccctaagtttg |
117 |
Q |
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| T |
11202852 |
acttgacaggtgacacatttaaggaaaataatatacggctgatggtcaaataaagatcacgtgggttggatatgtaccacatagacttgccctaagtttg |
11202951 |
T |
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| Q |
118 |
atcaaatttgttacgatttgaatattgttttcaatttgtgttttttaattgctaaatgcctggggcgatcctattatttcttgacctctctg |
209 |
Q |
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| T |
11202952 |
atcaaatttgttacgatttgaatgttgtcttcaatttgtgttttttacttgctaaacgccggcggcgatcctattatttcttgccctctctg |
11203043 |
T |
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Target: scaffold0076 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 46774 - 46957
Alignment:
| Q |
18 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgccctaagtttg |
117 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |
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| T |
46774 |
acttgacaggtaactctcttaaggaaaataatacacggctgatggttaaataaagatcacgtaggttggatatgtaccacataaacttgccctaagtttg |
46873 |
T |
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| Q |
118 |
atcaaatttgttacgatttgaatattgttttcaatttgtgttttttaattgctaaatgcctggggcgatcctattatttcttgacctctctg |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| |||||||| |
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| T |
46874 |
atcaaatttgttacgatttgaatattgttttcaatttgtgttttttatttgcta--------gggcgatcctattatttgttgccctctctg |
46957 |
T |
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Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 12325193 - 12325336
Alignment:
| Q |
18 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgccctaagtttg |
117 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
12325193 |
acttgacaggtgacactcttaaggaaaataatatacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgccctaagttgg |
12325292 |
T |
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| Q |
118 |
atcaaatttgttacgatttgaatattgttttcaatttgtgtttt |
161 |
Q |
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| T |
12325293 |
atcaaatttgttacgatttaaatattgttttcaatttgtgtttt |
12325336 |
T |
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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 20134743 - 20134650
Alignment:
| Q |
18 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgcccta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20134743 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgcccta |
20134650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 44357328 - 44357421
Alignment:
| Q |
18 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtggattggatatgtaccacatagacttgcccta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44357328 |
acttgacaggtgacactcttaaggaaaataatacacggctgatggttaaataaagatcacgtgggttggatatgtaccacatagacttgcccta |
44357421 |
T |
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