View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12050_low_9 (Length: 386)
Name: NF12050_low_9
Description: NF12050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12050_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Complemental strand, 54916043 - 54915678
Alignment:
| Q |
5 |
aagaagaacatgtattatttgaaggcaactaattaagaatcaattatcacatggtatttaatgcatagatgaatacaatccgaggtcacatcatatgctt |
104 |
Q |
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| T |
54916043 |
aagaagaacatgtattatttgaaggcaactaattaagaatcaattatcacatggtatttaatgcatagatgaatacaatccgaggtcacat---atgctt |
54915947 |
T |
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| Q |
105 |
tgatgctatttccttatctaaacgaatacattgtatttaacgtaaatatacggtgtagaattggcatgggctttgatactaattgcttattttagattta |
204 |
Q |
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| T |
54915946 |
tgatgctatttccttatctaaacgaatacattgtatttaacgtaaatatacggtgtagaattggcatgggctttgatactaactgcttattttagattta |
54915847 |
T |
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| Q |
205 |
ggtaattcttgtgtttcatttatcagaaaagatattcatatgttttgttgggttatccaggatgttccatctattatcatttgtcatggtgtgtactctt |
304 |
Q |
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| T |
54915846 |
ggtaattcttgtgtttcatttatcagaaaagatattcatatgttttgttgggttatccaggatgtttcatctatcatcatttgtcatggtgtgttctctt |
54915747 |
T |
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| Q |
305 |
ttactcggaacttctaatgtgatgccattttattttccgatatttagtcatctgcgttgtttgttgtct |
373 |
Q |
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| T |
54915746 |
ttactcggaacttctaatgtgatgccattttattttccgatatttagttatcggcgttgtttattgtct |
54915678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 54923684 - 54923601
Alignment:
| Q |
53 |
acatggtatttaatgcatagatgaatacaatccgaggtcacatcatatgctttgatgctatttccttatctaaacgaatacattgta |
139 |
Q |
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| T |
54923684 |
acatggtatttaatgcttagatgaaaacagtacgaggtga---catatgctttgatattaattccttatataaatgaatatattgta |
54923601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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