View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12051_high_1 (Length: 1014)

Name: NF12051_high_1
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12051_high_1
NF12051_high_1
[»] chr8 (14 HSPs)
chr8 (1-688)||(445932-446609)
chr8 (703-987)||(445619-445903)
chr8 (7-101)||(474543-474637)
chr8 (1-103)||(455233-455335)
chr8 (743-927)||(473945-474129)
chr8 (1-102)||(479878-479979)
chr8 (3-102)||(467514-467613)
chr8 (523-613)||(466741-466831)
chr8 (741-917)||(466489-466665)
chr8 (519-613)||(455034-455128)
chr8 (741-801)||(454889-454949)
chr8 (548-606)||(474233-474291)
chr8 (488-611)||(479694-479823)
chr8 (743-927)||(479419-479603)
[»] chr2 (2 HSPs)
chr2 (741-884)||(27493764-27493907)
chr2 (528-613)||(27493543-27493631)


Alignment Details
Target: chr8 (Bit Score: 500; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 446609 - 445932
Alignment:
Q  1 caaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  446609 caaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttg 446510  T
Q  101 atacaacacactgcacaaacaaccnnnnnnnngtgaaaacatttatctatcaatctcacatctaaccaaataaattaacagcaatatatgtgtgt----c 196  Q
    ||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  446509 atacaacacactgcacaaacaaccaaaaaaaagtgaaaagatttatctatcaatctcacatctaaccaaataaattaacagcaatatatgtgtgtgtgtc 446410  T
Q  197 tagtatgtgttttatcaatatatattaattttactacaagttccacaaattacaaaaaagattatttgttaaaactttaaaatgattaatttgttttgaa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  446409 tagtatgtgttttatcaatatatattaattttactacaagttccacaaattacaaaaaagattatttgttaaaactttaaaatgattaatttgttttgaa 446310  T
Q  297 cttgatcttgcacatgcatcaacattgaaatttttggggtaagttttcgaccattacgatcctaaaaaactcaagaaaataggaattacaattttgcgcg 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||| ||||| ||| | ||||| || |||||     
T  446309 cttgatcttgcacatgcatcaacattgaaatttttggggtaagttttcgaccatttggatcctacaaaactcgagaaattagtatttacagttgtgcgc- 446211  T
Q  397 gaggaagatataggatttatacnnnnnnnnnnnnnnnntattaaagggacatgtagaagaagatttaagtttgggaatggaatttgtggtttacatgagt 496  Q
      |||||||||| ||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  446210 --ggaagatatatgatttata---aaaaaaaaaaaaaatattaaagggacatgtagaagaagatttaagtttgggaatggaatttgtggtttac------ 446122  T
Q  497 gtaaatatgcatttatattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcag 596  Q
      |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  446121 --aaatatgcatgtatattactagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcag 446024  T
Q  597 agtttctcctgtcaaaagaaaaaagtgagaaacaaataattaataaacacatttgacatgagagggaagatgagtaattaagaaataataaa 688  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  446023 agtttctcctgtcaaaagaaaaaagagagaaacaaataattaataaacacatttgacatgagagggaagatgagtaattaagaaataataaa 445932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 703 - 987
Target Start/End: Complemental strand, 445903 - 445619
Alignment:
Q  703 ggaagagaagtagtaatagtaaagtataacatactcatataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaatacc 802  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  445903 ggaagagaagtagtaatagtaaagtatagcatactcatataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaatacc 445804  T
Q  803 gctgggttcataccctccaaaagtgcaattcttgtgctaagattcatgcctgagtatatagattgtatcaacaacataaccaatactggcatgtagtatt 902  Q
    || ||| ||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||||||||||||||||||||||||| |||||||||||||    
T  445803 gccgggctcataccctccaaaagtgcaattcttgtgctaagatttacgcccgggaatatagattgtatcaacaacataaccaataccggcatgtagtatt 445704  T
Q  903 ctatgtctaaacctctcatctttgcaatgtacttgcccctcctcacgctaatgtgttttataagctgtcaaatttttgccacaca 987  Q
    |||||||||||||||||||| |||| ||||| |   || || |||| ||||||||||| ||||||||||||||||||||||||||    
T  445703 ctatgtctaaacctctcatccttgctatgtattatgccatcatcaccctaatgtgtttaataagctgtcaaatttttgccacaca 445619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 474637 - 474543
Alignment:
Q  7 ctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttga 101  Q
    ||||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  474637 ctgctataacaaatgtgactgcaggaataagattggtcatggcacttgcaattgaagaagaagatagatatagaccctcaaaatatagattttga 474543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 455335 - 455233
Alignment:
Q  1 caaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttg 100  Q
    |||||| |||||| |||||||||| ||||||| |||||||| |||||||| ||||| |||||| ||| ||||||||||||||||||||||||||||||||    
T  455335 caaaggttgctataacaaatgtgactgctggagtaagattgatcatggcagttgcagttgaagaagatgatagatatagaccctcaaaatataaattttg 455236  T
Q  101 ata 103  Q
    |||    
T  455235 ata 455233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 743 - 927
Target Start/End: Complemental strand, 474129 - 473945
Alignment:
Q  743 aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaataccgctggg-ttcataccctccaaaagtgcaattcttgtgcta 841  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| | |||||||| || ||||  |||||||||||||||| |  | |||| ||| |    
T  474129 aaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaata-cgttgggactcataccctccaaaagggtgactcttatgcca 474031  T
Q  842 agattcatgcctgagtatatagattgtatcaacaacataaccaatactggcatgtagtattctatgtctaaacctctcatctttgc 927  Q
    |||||||| ||||  |||||| | |||||||| | |||||||| || |||||| || || || |||||||||| || |||||||||    
T  474030 agattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctttgc 473945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 479979 - 479878
Alignment:
Q  1 caaaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttg 100  Q
    |||||||||||||||||||||||| |||||||| ||| |||  |||||||||||||| ||||||||||| |||| ||| |||||||||| ||||||||||    
T  479979 caaaggctgctattacaaatgtgactgctggaacaaggttggacatggcacttgcaactgaagcagaagctagaaatataccctcaaaaaataaattttg 479880  T
Q  101 at 102  Q
    ||    
T  479879 at 479878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 467613 - 467514
Alignment:
Q  3 aaggctgctattacaaatgtgattgctggaataagattgttcatggcacttgcaattgaagcagaagatagatatagaccctcaaaatataaattttgat 102  Q
    |||||||| ||||||||||||| ||| |||| |||||||   ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||    
T  467613 aaggctgcaattacaaatgtgactgccggaagaagattggaaatggcacttgcaactgaagaagaagaaagatatagaccctcaaaatataaattttgat 467514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 523 - 613
Target Start/End: Complemental strand, 466831 - 466741
Alignment:
Q  523 aatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaaaa 613  Q
    |||| ||||||||| ||||||||| |||||||| ||| |||||||||||||||| || ||||| || ||| ||||||||||||||||||||    
T  466831 aatggaaacaaacccaattagtgaggtcatgaaaatcaaggaaaaactccttaaattcaaggaatatgagccagagtttctcctgtcaaaa 466741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 741 - 917
Target Start/End: Complemental strand, 466665 - 466489
Alignment:
Q  741 ataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaataccgctgggttcataccctccaaaagtgcaattcttgtgct 840  Q
    |||||||||| |  |||||||||| |||||||||||||||| ||||||| | |||||||| |  |||  ||||||||||||||||||| ||||||||||     
T  466665 ataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattcttgtgcc 466566  T
Q  841 aagattcatgcctgagtatatagattgtatcaacaacataaccaatactggcatgtagtattctatgtctaaacctc 917  Q
    |||| ||   ||||   ||||  | ||||||||||||||||| | || ||||| |||||| || |||| ||| ||||    
T  466565 aagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgtttaatcctc 466489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 519 - 613
Target Start/End: Complemental strand, 455128 - 455034
Alignment:
Q  519 agaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcctgtcaaaa 613  Q
    |||||| | ||||||||| ||||||||| |||||||| ||||||||||||||  |||| |||||||| || |||  |||||||||||||| ||||    
T  455128 agaaaaaggaaacaaacccaattagtgaggtcatgaaaatccaggaaaaacttgttaaatttaaggaataagagcgagagtttctcctgtgaaaa 455034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 741 - 801
Target Start/End: Complemental strand, 454949 - 454889
Alignment:
Q  741 ataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaatac 801  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||||| || ||||||    
T  454949 ataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaatac 454889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 548 - 606
Target Start/End: Complemental strand, 474291 - 474233
Alignment:
Q  548 gtcatgaatatccaggaaaaactccttaagtttaaggagtaggaggcagagtttctcct 606  Q
    |||||||| ||| |||||||||||||||| |||||||| || |||||||||||||||||    
T  474291 gtcatgaaaatcaaggaaaaactccttaaatttaaggaataagaggcagagtttctcct 474233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 488 - 611
Target Start/End: Complemental strand, 479823 - 479694
Alignment:
Q  488 tacatgagtgtaaatatgcatttatatta------ctagaaaatgaaaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagttta 581  Q
    ||||||||||||||||||| |||||||||      ||||| |||| |||| |||| ||||||||| || | ||||| | | |||||||||||||| ||||    
T  479823 tacatgagtgtaaatatgcgtttatattattattactagagaatggaaactaacccaattagtgaggttaagaataacaaagaaaaactccttaaattta 479724  T
Q  582 aggagtaggaggcagagtttctcctgtcaa 611  Q
    |||| || ||| |||| |||||||| ||||    
T  479723 aggaataagagccagaatttctcctatcaa 479694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 743 - 927
Target Start/End: Complemental strand, 479603 - 479419
Alignment:
Q  743 aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaataccgctgggttcataccctccaaaagtgcaattcttgtgctaa 842  Q
    ||||||||||  |||||||||| ||||||||||| ||||| |||||| | |||||||| |   ||| ||| ||||| ||||| | |||||||||||| ||    
T  479603 aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgccaa 479504  T
Q  843 gattcatgcctgagtatatagattgtatcaacaacataaccaatactggcatgtagtattctatgtctaaacctctcatctttgc 927  Q
     |  ||  ||||  |||||| | | |||||||| |||| ||| || ||| | |||||| || |||||||||| || |||||||||    
T  479503 tacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgc 479419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 741 - 884
Target Start/End: Original strand, 27493764 - 27493907
Alignment:
Q  741 ataaataagcaattggagcaagaaaaatggttgcaaaagcattacggtaaattacaaataccgctgggttcataccctccaaaagtgcaattcttgtgct 840  Q
    ||||||||||||  ||||||||||||||||||||||||||||  || || | ||||||||||  |||  ||| ||||||||||||| |||||||||| |     
T  27493764 ataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaattcttgtacc 27493863  T
Q  841 aagattcatgcctgagtatatagattgtatcaacaacataacca 884  Q
    |||| ||| |||||| |||||  | |||||||| ||||||||||    
T  27493864 aagagtcaagcctgaatatattaactgtatcaataacataacca 27493907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 528 - 613
Target Start/End: Original strand, 27493543 - 27493631
Alignment:
Q  528 aaacaaacctaattagtgaagtcatgaatatccaggaaaaactccttaagtttaagga---gtaggaggcagagtttctcctgtcaaaa 613  Q
    ||||||||| || ||||||||| ||||||||||| ||||||||| |||| ||||||||   | ||||| |||| |||||||||| ||||    
T  27493543 aaacaaacccaactagtgaagtgatgaatatccaagaaaaactctttaaatttaaggaatgggaggagccagaatttctcctgtaaaaa 27493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University