View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_high_16 (Length: 421)
Name: NF12051_high_16
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_high_16 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 41932618 - 41932222
Alignment:
| Q |
12 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932618 |
agacagcatctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
41932519 |
T |
|
| Q |
112 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932518 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
41932419 |
T |
|
| Q |
212 |
gctgacagaaatgcttcaccaacagctactgcagccatgatcaggatcaagaaaggttctagctaggtgcactaaaagcttaactagttcggttcattga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932418 |
gctgacagaaatgcttcaccaacagctactgcagccatgatcaggatcaagaaaggttctagctaggtgcactaaaagcttaactagttcggttcattga |
41932319 |
T |
|
| Q |
312 |
tatttctcattacagtaagactaagataatacaatccgcttgttctgtggttctagatattttggagcaaatattcataaattcatatattaaaatt |
408 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932318 |
tatttctcattacagtaagactaagataatacaatccgcttgttctgtggttctagatattttggagcaaatattcataaattcatatattaaaatt |
41932222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 33549369 - 33549301
Alignment:
| Q |
145 |
tttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
213 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||| |||||||||| |
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|
| T |
33549369 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagc |
33549301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 33354035 - 33354103
Alignment:
| Q |
145 |
tttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
213 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| || |||||||||||||| |||||||||| |
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|
| T |
33354035 |
tttcttcccacggatcaagtcaacaacctcaagagaagtgagtatgtcaaggacaactccaatgaaagc |
33354103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 4315304 - 4315525
Alignment:
| Q |
14 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
4315304 |
acagcatctttgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgt |
4315403 |
T |
|
| Q |
114 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
4315404 |
tcttcaacctttggatcaaattgacggcaactttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagc |
4315503 |
T |
|
| Q |
214 |
tgacagaaatgcttcaccaaca |
235 |
Q |
| |
|
|||| ||| |||||||||||| |
|
|
| T |
4315504 |
agacaaaaaagcttcaccaaca |
4315525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 4306442 - 4306659
Alignment:
| Q |
14 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
4306442 |
acagcatctttgagatcatcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaagagtgt |
4306541 |
T |
|
| Q |
114 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
213 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4306542 |
tcttcaacctttgaaccaagttgacgtcaactttcttcccacggatcaagtcaacaacctcaggagaagcaagcctgtcgaggacaacttcaatgaaagc |
4306641 |
T |
|
| Q |
214 |
tgacagaaatgcttcacc |
231 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
4306642 |
ggacagaaatgattcacc |
4306659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 4253198 - 4252946
Alignment:
| Q |
12 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
111 |
Q |
| |
|
||||| || ||||||||||||||| |||| |||||| || || || |||||||||||| || || ||||| || || |||||||| |||||||||||||| |
|
|
| T |
4253198 |
agacaacacctttgagatcatcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagt |
4253099 |
T |
|
| Q |
112 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
4253098 |
gttcttcaacctttggaccaaattgacgtcaactttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaacttcaatgaaa |
4252999 |
T |
|
| Q |
212 |
gctgacagaaatgcttcaccaacagctactgcagccatgatcaggatcaagaa |
264 |
Q |
| |
|
|| ||||||||||||||||| ||||| | | |||||||||| ||||||||| |
|
|
| T |
4252998 |
gcagacagaaatgcttcacctacagccgccactgccatgatcacgatcaagaa |
4252946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 4309318 - 4309560
Alignment:
| Q |
12 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||| |
|
|
| T |
4309318 |
agacagcgtctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagt |
4309417 |
T |
|
| Q |
112 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
211 |
Q |
| |
|
||| ||||||||||| | |||||||| || |||||| |||||| | || ||||||| ||||| ||||||||| ||||||||||||||||||||||| || |
|
|
| T |
4309418 |
gttattcaacctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaat |
4309517 |
T |
|
| Q |
212 |
gctgacagaaatgcttcaccaacagctactgcagccatgatca |
254 |
Q |
| |
|
|| ||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
4309518 |
aaagatagaaaagcttcaccaacagctgcagcagccatgatca |
4309560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 4246070 - 4245988
Alignment:
| Q |
16 |
agcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaa |
98 |
Q |
| |
|
|||||||||||| ||||| | | | |||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
4246070 |
agcatctttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 34803320 - 34803488
Alignment:
| Q |
14 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
113 |
Q |
| |
|
||||| |||||||| ||||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||| | |||||||| || ||||| |||| | |
|
|
| T |
34803320 |
acagcgtctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttctattccgcatcataaagaacagcttctactgcatatggagtat |
34803419 |
T |
|
| Q |
114 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaag |
182 |
Q |
| |
|
||||||||| ||| | ||||||||| ||||| | ||||||||| ||||| |||| || || |||||||| |
|
|
| T |
34803420 |
tcttcaaccgttgtaccaaattgacatcaacctgcttcccacggatcaattcaagaatctgaggagaag |
34803488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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