View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12051_high_18 (Length: 416)

Name: NF12051_high_18
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12051_high_18
NF12051_high_18
[»] chr1 (11 HSPs)
chr1 (20-398)||(2288966-2289344)
chr1 (257-379)||(670986-671108)
chr1 (273-362)||(28239054-28239146)
chr1 (275-340)||(6326786-6326851)
chr1 (277-352)||(47569148-47569226)
chr1 (266-345)||(14508839-14508918)
chr1 (282-359)||(28231490-28231570)
chr1 (167-208)||(677086-677127)
chr1 (20-220)||(671140-671337)
chr1 (291-340)||(677216-677265)
chr1 (291-336)||(21159183-21159228)
[»] chr5 (1 HSPs)
chr5 (291-353)||(1717892-1717954)
[»] chr3 (2 HSPs)
chr3 (274-351)||(47924934-47925011)
chr3 (150-213)||(47925063-47925126)
[»] chr6 (2 HSPs)
chr6 (291-345)||(24934101-24934155)
chr6 (291-345)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Complemental strand, 2289344 - 2288966
Alignment:
Q  20 cctagtacttccaatttgaatgatctttttaaagctttatgttgaaaaggccaggcttacaaagcaatgctgttttacaattacattaaacttaagggtg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289344 cctagtacttccaatttgaatgatctttttaaagctttatgttgaaaaggccaggcttacaaagcaatgctgttttacaattacattaaacttaagggtg 2289245  T
Q  120 gttttcagttcaacagtgatacttatcagattctagttaatggcttatgttatagtggagaaactcaaagagccatacaattgctgagacaggtactatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2289244 gttttcagttcaacagtgatacttatcagattctagttaatggcttatgttatagtggagaaactcaaagagccatacaattgctgggacaggtactatt 2289145  T
Q  220 actaaagattgacaccagacaagaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctat 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289144 actaaagattcacaccagacaagaaatgtatgacatagttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctat 2289045  T
Q  320 gatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttctgtg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2289044 gatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatcatcatataacttaaggcttgtgtg 2288966  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 671108 - 670986
Alignment:
Q  257 gttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgc 356  Q
    ||||||||| ||||  |||||||| |||||||  |||| ||||||||||||| ||||| ||||| |||||||| | |||||||||||||||| |||  |     
T  671108 gttttgttggataagaaaatcatattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgattgttaacaagatcgagt 671009  T
Q  357 ctgattatgacacacatcatcat 379  Q
    |||||| || |||||||||||||    
T  671008 ctgattgtgtcacacatcatcat 670986  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 28239054 - 28239146
Alignment:
Q  273 aaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctgatt 362  Q
    ||||||||  ||||||| |||| ||||||||||||| ||||||||||||||| |||||| |||||||   ||||||||||||||  |||||||    
T  28239054 aaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccctgatt 28239146  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 6326851 - 6326786
Alignment:
Q  275 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 340  Q
    ||||||||||| ||| |||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  6326851 atcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt 6326786  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 352
Target Start/End: Original strand, 47569148 - 47569226
Alignment:
Q  277 catactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt---gttaacaacatc 352  Q
    |||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||   ||||||||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatc 47569226  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 14508918 - 14508839
Alignment:
Q  266 tataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 345  Q
    |||||| | |||||| |||| ||  |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  14508918 tataacaatatcatattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaa 14508839  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 28231490 - 28231570
Alignment:
Q  282 tcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctg 359  Q
    |||| ||| |||| ||||||||||| | |||||||||||| ||||||||| |||||||   |||||||||||||| |||||    
T  28231490 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctg 28231570  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 677086 - 677127
Alignment:
Q  167 tgttatagtggagaaactcaaagagccatacaattgctgaga 208  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  677086 tgttatagcggagaaactcaaagagccatacaattgttgaga 677127  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 671337 - 671140
Alignment:
Q  20 cctagtacttccaatttgaatgatctttttaaagctttatgttgaaaaggccaggcttacaaagcaatgctgttttacaattacattaaacttaagggtg 119  Q
    ||||| ||| ||| ||||||||||||||| |||| |||| ||  || |||  ||  ||| ||||||| | |||||||| ||||||| | ||| ||||||     
T  671337 cctagaactaccactttgaatgatcttttaaaaggtttaagtcaaataggagagagttataaagcaacgttgttttaccattacatcatactcaagggt- 671239  T
Q  120 gttttcagttcaacagtgatacttatcagattctagttaatggcttatgttatagtggagaaactcaaagagccatacaattgctgagacaggtactatt 219  Q
      ||||||||  ||  ||||| || |||||||| | | ||||  |||||| ||||  ||||||| |||||||||| ||||||| ||||||| ||| ||||    
T  671238 --tttcagttggaccttgatagttgtcagattcaaatgaatgagttatgtcatagaagagaaacgcaaagagccacacaattgttgagacaagtattatt 671141  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 677216 - 677265
Alignment:
Q  291 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 340  Q
    |||| ||||||||||||   ||||||||||||||||||||| ||||||||    
T  677216 gcaaagatagacttgtacatcaagcctatgatttatattctgaaatgatt 677265  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 21159228 - 21159183
Alignment:
Q  291 gcaaggatagacttgtaatccaagcctatgatttatattctaaaat 336  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  21159228 gcaaagatagacttataaaccaagcctatgatttatattctgaaat 21159183  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 291 - 353
Target Start/End: Original strand, 1717892 - 1717954
Alignment:
Q  291 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatca 353  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||    
T  1717892 gcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatca 1717954  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 47925011 - 47924934
Alignment:
Q  274 aatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacat 351  Q
    |||||||||||  ||| |||| |||||||| ||||  ||||||||||| || |||||| ||||||||||||| |||||    
T  47925011 aatcatactcaccctctgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgattgttaagaacat 47924934  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 47925126 - 47925063
Alignment:
Q  150 ttctagttaatggcttatgttatagtggagaaactcaaagagccatacaattgctgagacaggt 213  Q
    ||||||| ||||||||||||  || ||||||| |||||||||||||||| ||| | ||||||||    
T  47925126 ttctagtcaatggcttatgtcgtattggagaagctcaaagagccatacacttgttcagacaggt 47925063  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 24934101 - 24934155
Alignment:
Q  291 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 345  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24934101 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24934155  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 24941634 - 24941688
Alignment:
Q  291 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 345  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24941634 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24941688  T

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