View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12051_high_21 (Length: 383)
Name: NF12051_high_21
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Original strand, 8945066 - 8945416
Alignment:
| Q |
9 |
aatgatttctagtattcatcagaaaacacaaataattcctataaaatatagcccaaaatcaaaaagcatgacaactgtgataagtctcattgcaatacca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8945066 |
aatgatttctagtattcatcagaaaacacaaataattcctataaaatatagcccaaaatcaaaaagcatgacaactgtgataagtatcattgcaatacca |
8945165 |
T |
|
| Q |
109 |
aattgtaataagtactaactttttattcaagttatactattctactaattgtcatttaacatagtgatctactcatctacaaattgaaattggtggtagt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8945166 |
aattgtaataagtactaactttttattcaagttatactattctactaattgtcatttaacatagtgatct--------acaaattgaaattggtggtagt |
8945257 |
T |
|
| Q |
209 |
taccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945258 |
taccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtcattctagggccttcaatcctc |
8945357 |
T |
|
| Q |
309 |
aacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacact |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8945358 |
aacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggatagcact |
8945416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 364
Target Start/End: Complemental strand, 8975248 - 8975067
Alignment:
| Q |
183 |
atctacaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattatttt |
282 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||| |||| || ||||||| |||||||| |||| |
|
|
| T |
8975248 |
atctacaaattgaaattgggggttgttacaacaatagggctccttaccacatgcttcccatcctgccaagtgagatatccaaaagaaacttcattctttt |
8975149 |
T |
|
| Q |
283 |
gtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataac |
364 |
Q |
| |
|
||| || ||| | |||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
8975148 |
gtgccactcttgcatcttcaatcctcaacttgtagcttaatttctcgtttttcttattgaacaccaacttatttgggataac |
8975067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 366
Target Start/End: Complemental strand, 8963846 - 8963669
Alignment:
| Q |
189 |
aaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattattttgtgtca |
288 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||||||||||||||||||||||| || ||| |||| || ||||||| || |||||| || ||||||| |
|
|
| T |
8963846 |
aaattaaaattgggcgttgttaccacaatagggctcctcaccacatgcttcccattcttccaagtgagatatccaaaagataattcattcttctgtgtca |
8963747 |
T |
|
| Q |
289 |
ttctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacac |
366 |
Q |
| |
|
||| || ||||||||||||| ||||||||||| |||||||||||| |||||||| |||| ||||||| ||||||| |
|
|
| T |
8963746 |
ttcgtcggtgttcaatcctcaacctgtagcttagcttctcattcttctcattgaacaccaacctatttggaataacac |
8963669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 8958723 - 8958652
Alignment:
| Q |
298 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactga |
369 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||||||||||||| |
|
|
| T |
8958723 |
cttcaatcctcaacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactga |
8958652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 9947818 - 9947889
Alignment:
| Q |
298 |
cttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataacactga |
369 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
9947818 |
cttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacactga |
9947889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 183 - 365
Target Start/End: Original strand, 21686398 - 21686580
Alignment:
| Q |
183 |
atctacaaattgaaattggtggtagttaccacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctacttcattatttt |
282 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||||| |||||||| ||||||||| |||| | || |||||| || ||||||| ||| |||| |
|
|
| T |
21686398 |
atctacaaattgaaattgatgttggttaccacaatagggctcctaaccacatgtttcccatcccgccaagagaggtaaccgaaggctactttattctttt |
21686497 |
T |
|
| Q |
283 |
gtgtcattctagggccttcaatcctcaacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataaca |
365 |
Q |
| |
|
|||||||||| |||||||| ||| ||||||||||||||| | |||| |||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
21686498 |
gtgtcattcttgggccttcgatcttcaacttgtagcttatcttctcgttcttcttcttgaacaccaacttatttggaataaca |
21686580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 365
Target Start/End: Original strand, 34962042 - 34962197
Alignment:
| Q |
210 |
accacaatagggctcctcaccacatgcttcccatcctgccatgtgatgtaaccaaaagctactt-cattattttgtgtcattctagggccttcaatcctc |
308 |
Q |
| |
|
||||||||||| ||||| || ||||||||| ||||| |||||| | || |||||||| |||| | ||| ||| |||||| || | ||||||||||| |
|
|
| T |
34962042 |
accacaataggactcctaacaacatgcttcacatccatccatgttagatatccaaaagccactttctttaattt-tgtcatacttgcaacttcaatcctc |
34962140 |
T |
|
| Q |
309 |
aacttgtagcttagcatctcattcttcttattgaacatcaacttatttgggataaca |
365 |
Q |
| |
|
|| |||||||||||| |||||||||||| ||| |||| ||| || |||||||||||| |
|
|
| T |
34962141 |
aatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataaca |
34962197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University