View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_high_4 (Length: 712)
Name: NF12051_high_4
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 183 - 701
Target Start/End: Complemental strand, 10017640 - 10017122
Alignment:
| Q |
183 |
ttttaacttttattagtccaaagaactaagttgatagcactctacaaagtcaataaccagtttgataattcactattttaattcaagtgcattgacattt |
282 |
Q |
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| T |
10017640 |
ttttaacttttattagtccagagaactaagttgatagcaccctacaaagtcaataaccagtttgataattcactattttaattcaagtgcattgacattt |
10017541 |
T |
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| Q |
283 |
ttgataaatataagtacagcctttaaatgtgatagaaattacattggatcacaccctgattacatttatgacaaaggcattaagagatgacaagataaga |
382 |
Q |
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| T |
10017540 |
ttgataaatacaaatacagcctttaaatgtgatagaaattacattggatcacaccctgattacatttatgacaaaggcattaagagatgacaagataaga |
10017441 |
T |
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| Q |
383 |
atagtgaataaagtgatacacaaagtaatgaaaataatttgcttaattgctttgaatttttcaaagatttagtatcattattattagatctatcttctct |
482 |
Q |
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| T |
10017440 |
atagtgaataaagtgatacacaaagtaatgaaaataatttgcttaattgctttgaatttttcaaagatttagtatcattattattagatctatcttctct |
10017341 |
T |
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| Q |
483 |
tttcacttccatattctgatttataacttcttgtccttcctatgagcatttccttatgatccaagttcaacatgcttcctggaatactttcttctttgac |
582 |
Q |
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| T |
10017340 |
tttcacttccatattctgatttataacttcttgtccttcctatgagcatttccttatgatccaagttcaacatgcttcctggaatactttcttctttgac |
10017241 |
T |
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| Q |
583 |
tcctcttataaccatcnnnnnnncaaagtccaagcataacttatcatctaaccttttagttttgtgttgacccttttctctactctcagcaagagaggtt |
682 |
Q |
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| T |
10017240 |
tcctcttataaccatctttttttcaaagtccaagcataacttatcatctaaccttttagttttgtgttgacccttttctctactctcagcaagagaggtt |
10017141 |
T |
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| Q |
683 |
cttcttgtgatttcttctc |
701 |
Q |
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| T |
10017140 |
cttcttgtgatttcttctc |
10017122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 10017872 - 10017682
Alignment:
| Q |
17 |
agaaagaacctatgtaaacaagttttttattataaaaacgcagaaaggcaatgcacgagatgcagcctagtgtagttaaattctggtcgttccattcata |
116 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10017872 |
agaaagaacctatgtaaacaagtttttgattataaaaacgcaaaaaggcaatgcacgagatgcagcctagtgtagttaaattctggtcgttccattcata |
10017773 |
T |
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| Q |
117 |
agcaaaaatctaaagttgattatttagcgttttactgttatttaatgttctgacagagaaggactattttaacttttattagtccaaagaa |
207 |
Q |
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| T |
10017772 |
agcaaaaatctaaagttgattatttagcgttttactgttatttaatgttctgacagagaaggacttttttaacttttattagtccaaagaa |
10017682 |
T |
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