View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_high_6 (Length: 660)
Name: NF12051_high_6
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 41104264 - 41104853
Alignment:
| Q |
18 |
cacttgcaacttggtactccactcttctttacttgctcatatcatatatcgccctagtccttacattacaatgacattagcatgaccttttccaactata |
117 |
Q |
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| T |
41104264 |
cacttgcaacttggtactccactcttctttacttgctcatatcatat--cgccctagtccttacattacaatgacattagcatgaccttttccaactcta |
41104361 |
T |
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| Q |
118 |
ttttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggccgtaggattaaaatgtttattttactcttttcgaataagccaaatt |
217 |
Q |
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| T |
41104362 |
ttttcattcaaacgcgttcatattcagacaaccataacatcacacgaaaccggccgtaggattaaaatgtttattttactcttttggaataagccaaatt |
41104461 |
T |
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| Q |
218 |
ttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccagatccttctttacatatatttcatgtcagcccttatattaatccccc |
317 |
Q |
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| T |
41104462 |
ttcccaacaaatgcatttttacattaaattattcttctcttcatcattgaccagatccttctttacatatatttcatgtcagcccttatattaatccccc |
41104561 |
T |
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| Q |
318 |
aagtttataagaattatgcttatctagtcctaattccatt----------------------caacgaactcctctatactctatctatactataattat |
395 |
Q |
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| T |
41104562 |
aagtttataagaattatgcttatctagtcctaattccattcatcaccctctctatctagctgcaacgaactcctctatactctatctatactataattat |
41104661 |
T |
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| Q |
396 |
attactcctcacaccccttttcctcatctaatcacaatacaatttttattatagaacaaaatgaatcaattcccagacattcctacgggaagatcaccaa |
495 |
Q |
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| T |
41104662 |
attactcctcacaccccttttcctcatctaatcacaatacaatttttattatagaacaaaatgaatcaattcccagacattcctacaggaagatcaccaa |
41104761 |
T |
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| Q |
496 |
gaagagaacttcaaggtccacgtcctacacctcttagaatacacaaggactctcacaaaatcaagaaaccaccattggcgccacagcagcag |
587 |
Q |
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| T |
41104762 |
gaagagaacttcaaggtccacgtcctacacctcttagaatacacaaggactctcacaaaatcaagaaaccaccattggcgccacagcagcag |
41104853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 613 - 648
Target Start/End: Original strand, 41104879 - 41104914
Alignment:
| Q |
613 |
cgcgccaaccaattataatctacaccgtctccccta |
648 |
Q |
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| T |
41104879 |
cgcgccaaccaattataatctacaccgtctccccta |
41104914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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