View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_high_8 (Length: 592)
Name: NF12051_high_8
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 14 - 575
Target Start/End: Original strand, 41107754 - 41108323
Alignment:
| Q |
14 |
atggacatcacactgggtcaagtttataggtacgccaacaacatttcattcaatgtaggactcttagtcacacatgaaacaccaacatatcccactcaag |
113 |
Q |
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| T |
41107754 |
atggacatcacactgggtcaagtttatagatacgccaacaacatttcattcaatgtaggactcttagtcacacatgaaacaccaacatatcccactcaag |
41107853 |
T |
|
| Q |
114 |
tttgagttcattctttcttatgggtatccttagacaaaagtttgtccatccatgtatacttgcatcgccatgaggggagcactgagatcatcatattaga |
213 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41107854 |
ttcgagttcattctttcttatgggcatccttagacaaaagtttgtccatccatatatacttgcatcgccatgaggggagcactgagatcatcatattgga |
41107953 |
T |
|
| Q |
214 |
cgaaaagcaaccacacacgtgagtttgacacaacccaaaactttaagacgttatgtctatgggtaatctcac-nnnnnnnnnnaaggaatgggtaatctc |
312 |
Q |
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| T |
41107954 |
cgaaaagcaactacacacgtgagtttgacacaacccaaaactttaagacgttatgtctatgggtaatctcactttttttttttaaggaatgggtaatctc |
41108053 |
T |
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| Q |
313 |
acttatatggtggtcaacattcacttttctattaaatgtgagactcttactcacacttaaaacaccaacaaaaataaaatggataaaaataatttagctt |
412 |
Q |
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| T |
41108054 |
acttatatggtggtcaacattcacttttctattaaatgtgagactcttactcacacttaaaacaccaacaaaaataaaatggataaaaataatttagctt |
41108153 |
T |
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| Q |
413 |
tatttttacaagtgcatcatatgttatgggataaattaaggtatatatgaacttttctagacgccctagttctatatgactcccagtcatctacattgta |
512 |
Q |
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| T |
41108154 |
tatttttacaagtgcatcatatgttatgggataaattaaggtatatatgaacttttctagacgccctagttctatatgactcccagtcatctacattgta |
41108253 |
T |
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| Q |
513 |
tattttccatc-------nnnnnnnnaactttatctctccctctaatgttctaccttctctcatcttttt |
575 |
Q |
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| T |
41108254 |
tattttccatcttttttttttattttaactttatctctccctctaatgttctaccttctctcatcttttt |
41108323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 365
Target Start/End: Original strand, 22997921 - 22997977
Alignment:
| Q |
309 |
tctcacttatatggtggtcaacattcacttttctattaaatgtgagactcttactca |
365 |
Q |
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||||||||||| | | |||||||| ||||||| ||| ||||||||||||||||||| |
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| T |
22997921 |
tctcacttataaagagctcaacatttacttttcaattcaatgtgagactcttactca |
22997977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 17409711 - 17409758
Alignment:
| Q |
336 |
cttttctattaaatgtgagactcttactcacacttaaaacaccaacaa |
383 |
Q |
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| T |
17409711 |
cttttccattaaatgtgagactcttactcacatttaatataccaacaa |
17409758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 13848703 - 13848650
Alignment:
| Q |
313 |
acttatatggtggtcaacattcacttttctattaaatgtgagactcttactcac |
366 |
Q |
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| T |
13848703 |
acttatatgttggtcaacattaactttttccttaaatgtgggactcttactcac |
13848650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 381
Target Start/End: Original strand, 8850129 - 8850167
Alignment:
| Q |
343 |
attaaatgtgagactcttactcacacttaaaacaccaac |
381 |
Q |
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| T |
8850129 |
attaaatgtgagactcttactcacacttgaaataccaac |
8850167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 384
Target Start/End: Complemental strand, 30493221 - 30493164
Alignment:
| Q |
328 |
aacattcac-ttttctattaaatgtgagactcttactcacacttaaaacaccaacaaa |
384 |
Q |
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||||||||| ||||| ||| ||||||| |||||||||||||||||||| |||| |||| |
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| T |
30493221 |
aacattcaccttttcaattcaatgtgaaactcttactcacacttaaaataccagcaaa |
30493164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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