View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_12 (Length: 589)
Name: NF12051_low_12
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_12 |
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| [»] scaffold1319 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 120 - 448
Target Start/End: Original strand, 13319412 - 13319740
Alignment:
| Q |
120 |
attttttatttattgctgaaaatgtatttaaaatatgaaagcatcaacatctcttatcctaaccacctaaaaatcacaaataacacacatgagtaactgt |
219 |
Q |
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| T |
13319412 |
attttttatttattgctgaaaatgtatttaaaatatgaaagcatcaacgtctcttatcctaaccacctaaaaatcacaaataacacacatgagtaactgt |
13319511 |
T |
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| Q |
220 |
tatgatcaacaataaccctccccttgaaaagattatgaaatgtaggaaccttatagtagagcaactgttaggaggaaatgataacctcaaagggagcaaa |
319 |
Q |
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| T |
13319512 |
tatgatcaacaataaccctccccttgaaaagattatgaaatgtaggaaccttatagtagagcaactgttaggaggaaatgataacctcaaagggagcaca |
13319611 |
T |
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| Q |
320 |
agtcttccaaactttaccctaaataaggttaatttcatcttcgcgagttccccttactagggatgcttcatctggcacaatgaactactaactaacggta |
419 |
Q |
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| T |
13319612 |
agtcttccaaactttaccctaaataaggttaacttcatcttcgcaagttccccttactagggatgcttcatctggcacaatgaactactaactaacggta |
13319711 |
T |
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| Q |
420 |
gtttgggtggtgcccagtcttctgagcta |
448 |
Q |
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| T |
13319712 |
gtttgggtggtgcccagtcttctgagcta |
13319740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 13319285 - 13319394
Alignment:
| Q |
19 |
atgttgatttaaacatgctctttatatcatgtttaatttttatcttgtcgatggttatatataataatttatttggatgcaaatttcatttgagcgcaaa |
118 |
Q |
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| T |
13319285 |
atgttgatttaaacatgctctttatatcatgtttaatttttatcttgtcgatggttatatataataatttatttggatgcaaatttcatttgagcgcaaa |
13319384 |
T |
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| Q |
119 |
cattttttat |
128 |
Q |
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| T |
13319385 |
cattctttat |
13319394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 13306328 - 13306476
Alignment:
| Q |
37 |
tctttatatcatgtttaatttttatcttgtcgatggttatatataataatttatttggatgcaaatttcatttgagcgcaaacattttttatttattgct |
136 |
Q |
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| T |
13306328 |
tctttatatcatgtttaatatttatcttgtcgattattata-ata--aatttatttggatgcaaatttcatttga--gcaaacattcttcatata-taca |
13306421 |
T |
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| Q |
137 |
gaaaatgtatttaaaatatgaaagcatcaacatctcttatcctaaccacctaaaa |
191 |
Q |
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| T |
13306422 |
agtcttttatttaaaatatgaaagcatcaaagtttcttatcctaaccacctaaaa |
13306476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 13306490 - 13306583
Alignment:
| Q |
236 |
cctccccttgaaaagattatgaaatgtaggaaccttatagtagagcaactgttaggaggaaatgataacctcaaagggagcaaaagtcttccaaa |
330 |
Q |
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| T |
13306490 |
cctccgcttgaaaagattatgaaggataggaatcttgtactagagcaaccgtt-ggaggaaatgataacctcaaagagagcacaattcttccaaa |
13306583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 517 - 556
Target Start/End: Original strand, 13319810 - 13319849
Alignment:
| Q |
517 |
ctcttctcgctagggatttgttccccttttatatttttgt |
556 |
Q |
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| T |
13319810 |
ctcttctcgctagggatttgttccccttttatatttttgt |
13319849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1319 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1319
Description:
Target: scaffold1319; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 1087 - 1042
Alignment:
| Q |
521 |
tctcgctagggatttgttccc-cttttatatttttgttgtttggtg |
565 |
Q |
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| T |
1087 |
tctcgctagggatttgtttcctcttttatatttttgttgtttggtg |
1042 |
T |
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