View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_13 (Length: 566)
Name: NF12051_low_13
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_13 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 23 - 551
Target Start/End: Original strand, 18556141 - 18556664
Alignment:
| Q |
23 |
agaaactcctacaccagctattgataaaaataagaaaaaatacaagcaatatttttctccctagacaaacacgaaaaaccactcctaaacaaaa-attaa |
121 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18556141 |
agaaacccctacaccagctattgataaaaataagaaaaaatacaagcaatattttgctccctagacaaacacgaaaaaccactcctaaacaaaaaattaa |
18556240 |
T |
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| Q |
122 |
gcaatattttctttcaaatttcatcgaatttggaatttgcttcatatcctattgtattgaggtgtctgtgctgttgctcacgaatttaattcatcgacat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556241 |
gcaatattttctttcaaatttcatcgaatttggaattttcttcatatcctattgtattgaggtgtctgtgctgttgctcacgaatttaattcatcgacat |
18556340 |
T |
|
| Q |
222 |
tctgctgctcttcaatttagtttcatattcctttacttcacaccaggttcttaggtcaggttcaatttaatttaatannnnnnnggaagaagaccttgat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
18556341 |
tctgctgctcttcaatttagtttcatattcctttactt--caccaggttcttaggtcaggttcaatttaatttttt----ttttggaagaagaccttgat |
18556434 |
T |
|
| Q |
322 |
tgcaattaactggctcagaagtagtccaaactgtttcttgtcactgtgattgctgtgaagacagtcttctcttctcttaacatttgttctcctatcctag |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556435 |
tgcaattaactggctcagaagtagtccaaactgtttcttgtcactgtgattgctgtgaagacagtcttctcttctcttaacatttgttctcctatcctag |
18556534 |
T |
|
| Q |
422 |
ttcatggcaaagttaatgaaatgcctctcattattaactataaggaataatgatatgtaaggaataatgatttttgctatatcattcacaaggtatattg |
521 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18556535 |
ttcatggcaaagttaatgaaatgcctctcattattaactataaggaataatgatatgtatggaataatgatttttgctatatcattcacaaggtatattg |
18556634 |
T |
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| Q |
522 |
gtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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| T |
18556635 |
gtacaatatatagaaacatatttgctgtcc |
18556664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 24495424 - 24495329
Alignment:
| Q |
457 |
aactataaggaataatgatatgtaaggaataatgattttt-gctatatcattcacaaggtatattggtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
24495424 |
aactataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcc |
24495329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 460 - 551
Target Start/End: Complemental strand, 24491863 - 24491771
Alignment:
| Q |
460 |
tataaggaataatgatatgtaaggaataatgattttt-gctatatcattcacaaggtatattggtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcc |
24491771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 507 - 551
Target Start/End: Complemental strand, 2810371 - 2810327
Alignment:
| Q |
507 |
tcacaaggtatattggtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcc |
2810327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 460 - 551
Target Start/End: Complemental strand, 24359176 - 24359084
Alignment:
| Q |
460 |
tataaggaataatgatatgtaaggaataatgattttt-gctatatcattcacaaggtatattggtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcc |
24359084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 460 - 551
Target Start/End: Complemental strand, 86921 - 86830
Alignment:
| Q |
460 |
tataaggaataatgatatgtaaggaataatgatttttgctatatcattcacaaggtatattggtacaatatatagaaacatatttgatgtcc |
551 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| |
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| T |
86921 |
tataaggaataatgatatataaggaataatgatttttgctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcc |
86830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 29155292 - 29155194
Alignment:
| Q |
23 |
agaaactcctacaccagctattgataaaaataagaaaaaatacaagcaatatttttctccctagacaaacacgaaaaaccactcctaaacaaaaattaag |
122 |
Q |
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||||||||||||||||||||| || ||| |||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
29155292 |
agaaactcctacaccagctatggacaaacataagaaaaa-tacaagcattattttgctccctagacaaacactaaaaaccactcctaagcaaaaattaag |
29155194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 29154577 - 29154522
Alignment:
| Q |
362 |
tcactgtgattgctgtgaagacagtcttctcttctcttaacatttgttctcctatc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
29154577 |
tcactgtgattgctgtgaagacagtcttctcttctctaaacatttgtgttcctatc |
29154522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 29154645 - 29154597
Alignment:
| Q |
314 |
accttgattgcaattaactggctcagaagtagtccaaactgtttcttgt |
362 |
Q |
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|||| ||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
29154645 |
acctagattgcaattaactggctcagaaataatccaaactgtttcttgt |
29154597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 29154787 - 29154740
Alignment:
| Q |
162 |
ttcatatcctattgtattgaggtgtctgtgctgttgctcacgaattta |
209 |
Q |
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||||||||||||| ||||||| |||| ||||||||||||||||||||| |
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| T |
29154787 |
ttcatatcctattatattgagatgtccgtgctgttgctcacgaattta |
29154740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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