View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12051_low_14 (Length: 526)

Name: NF12051_low_14
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12051_low_14
NF12051_low_14
[»] chr4 (2 HSPs)
chr4 (17-511)||(4637320-4637815)
chr4 (298-358)||(14743121-14743181)
[»] chr8 (3 HSPs)
chr8 (107-511)||(22460874-22461278)
chr8 (303-356)||(22339739-22339792)
chr8 (183-258)||(22712827-22712903)
[»] chr7 (5 HSPs)
chr7 (34-356)||(18463227-18463549)
chr7 (307-368)||(14163317-14163378)
chr7 (312-366)||(24254595-24254649)
chr7 (288-347)||(9023245-9023304)
chr7 (303-358)||(14338800-14338855)
[»] chr3 (8 HSPs)
chr3 (28-247)||(14145463-14145682)
chr3 (300-358)||(12028548-12028606)
chr3 (300-358)||(13033110-13033168)
chr3 (298-367)||(138653-138722)
chr3 (303-358)||(7361589-7361644)
chr3 (303-373)||(14689571-14689641)
chr3 (298-358)||(10156898-10156958)
chr3 (298-358)||(10786146-10786205)
[»] scaffold0023 (1 HSPs)
scaffold0023 (298-358)||(7477-7537)
[»] chr1 (4 HSPs)
chr1 (298-358)||(21297915-21297975)
chr1 (298-355)||(22690381-22690438)
chr1 (310-366)||(43362541-43362597)
chr1 (298-358)||(22800936-22800996)
[»] scaffold0217 (1 HSPs)
scaffold0217 (447-510)||(27029-27092)
[»] chr2 (4 HSPs)
chr2 (33-196)||(23810314-23810477)
chr2 (300-358)||(24920480-24920538)
chr2 (298-358)||(23810152-23810212)
chr2 (303-354)||(23622606-23622657)
[»] scaffold0051 (1 HSPs)
scaffold0051 (303-355)||(73421-73473)
[»] scaffold0046 (1 HSPs)
scaffold0046 (298-358)||(56816-56876)
[»] scaffold0100 (1 HSPs)
scaffold0100 (298-373)||(2926-3001)
[»] chr6 (3 HSPs)
chr6 (291-354)||(13781188-13781251)
chr6 (303-358)||(19031323-19031378)
chr6 (312-365)||(16145678-16145731)
[»] scaffold0239 (1 HSPs)
scaffold0239 (300-358)||(25856-25914)
[»] scaffold0039 (1 HSPs)
scaffold0039 (282-354)||(49497-49569)
[»] scaffold0001 (2 HSPs)
scaffold0001 (298-358)||(94969-95029)
scaffold0001 (298-358)||(122928-122988)
[»] scaffold0040 (1 HSPs)
scaffold0040 (303-346)||(34961-35004)
[»] chr5 (1 HSPs)
chr5 (288-355)||(24666024-24666091)
[»] scaffold1900 (1 HSPs)
scaffold1900 (300-358)||(563-621)
[»] scaffold0241 (1 HSPs)
scaffold0241 (298-355)||(18692-18749)
[»] scaffold0108 (1 HSPs)
scaffold0108 (303-376)||(36201-36274)
[»] scaffold0064 (1 HSPs)
scaffold0064 (294-343)||(33814-33863)
[»] scaffold0002 (1 HSPs)
scaffold0002 (282-350)||(371895-371963)


Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 4637320 - 4637815
Alignment:
Q  17 acattcgactgtaaagccttggccatttagaggatggactctggacgtaatcggtgagattaaacctggttcgtcaaaagggcacaaatgcatattggtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4637320 acattcgactgtaaagccttggccatttagaggatggactctggacgtaaacggtgagattaaacctggttcgtcaaaagggcacaaatacatattggtt 4637419  T
Q  117 ggaatagactatttcaccaaatgggtagaagccatccatttaagaaaggttattcaagatgtggtcattagtttcattcaaaaccatattttggataggt 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4637420 ggaatagactatttcaccaaatgggtagaagccatccctttaagaaaggttactcaagatgtggtcattagtttcattcaaaaccatattttggataggt 4637519  T
Q  217 ttgaaattctagaaactatcaccactgatc-aggatcagtctttataggcnnnnnnnntggtacgatttgctaaccaaacaagtttcaaattgttaactt 315  Q
    ||| |||||||||||||||||||||| ||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  4637520 ttggaattctagaaactatcaccactaatcaaggatcagtctttataggccaaaaaaatggtacgatttgctaaccaaacaagtttcaaattgttaactt 4637619  T
Q  316 cgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaacctcatcactttgattaaaaataagttggaagaaaatccaagaggttc 415  Q
    | || |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  4637620 caacaccatattatgctcaagcaaatggtcaagtcgaagcaaccaataaaaacctcatcactttgattaaaaagaagttggaagaaaatccaagaggttg 4637719  T
Q  416 gcacaagacccttgatcaagttctataggcttatagaacttctcttagagaatcaactaacgcaactccctttaggcttacatttggacatgatgt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  4637720 gcacaagacccttgatcaagttctataggcttatagaacttctcttagaaaatcaaataacgcaactccctttaggcttacatttggacatgatgt 4637815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 14743181 - 14743121
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| |||||| | |||||||| || |||||||| |||||||||||||| || ||||||||    
T  14743181 gttttaaattgctgacttcgacaccctattatgcacaagcaaatggtcaggttgaagcagc 14743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 107 - 511
Target Start/End: Complemental strand, 22461278 - 22460874
Alignment:
Q  107 catattggttggaatagactatttcaccaaatgggtagaagccatccatttaagaaaggttattcaagatgtggtcattagtttcattcaaaaccatatt 206  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  22461278 catattggtcggaatagactatttcaccaaatgggtagacgccattcctttaaggaaggttactcaagatgtggtcattagtttcattcaaaaccatatt 22461179  T
Q  207 ttggataggtttgaaattctagaaactatcaccactgatca-ggatcagtctttataggcnnnnnnnntggtacgatttgctaaccaaacaagtttcaaa 305  Q
    ||| ||||| ||  ||||| | ||| |||  ||| |||||| |||||||| |||| | ||         | ||||||||||| |||||| | ||||||||    
T  22461178 ttgcatagggttagaattccataaaatattgccagtgatcaaggatcagtttttacaagccaaaaaac-gatacgatttgctgaccaaataggtttcaaa 22461080  T
Q  306 ttgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaacctcatcactttgattaaaaataagttggaagaaaatc 405  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  22461079 ttgttaacttcgacaccatattatgctcaagcaaatggtcaagtcgaagcagccaataaaaacctcatcactttgattagaaagaagttggaagaaaatc 22460980  T
Q  406 caagaggttcgcacaagacccttgatcaagttctataggcttatagaacttctcttagagaatcaactaacgcaactccctttaggcttacatttggaca 505  Q
    ||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| | |||||| ||||||||  |||||||||||| ||| |||||||||||    
T  22460979 caagaggttggcacaagaaccttgatcaagctctatgggcttatagaacttcccctagagagtcaactaaaacaactccctttaagctcacatttggaca 22460880  T
Q  506 tgatgt 511  Q
    ||||||    
T  22460879 tgatgt 22460874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 22339792 - 22339739
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagca 356  Q
    ||||| ||||||||||| || |||||||| |||||||||||||| || ||||||    
T  22339792 aaattattaacttcgacaccctattatgcacaagcaaatggtcaggttgaagca 22339739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 22712827 - 22712903
Alignment:
Q  183 attagtttcattcaaaaccatattttggataggtttgaaattctagaaactatcaccactgatc-aggatcagtctt 258  Q
    |||||||| |||||||| |||||| |  |||| ||||||||||  ||||||||||| || |||| ||||||||||||    
T  22712827 attagttttattcaaaatcatattctttatagatttgaaattcctgaaactatcactacggatcaaggatcagtctt 22712903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 34 - 356
Target Start/End: Original strand, 18463227 - 18463549
Alignment:
Q  34 cttggccatttagaggatggactctggacgtaatcggtgagattaaacctggttcgtcaaaagggcacaaatgcatattggttggaatagactatttcac 133  Q
    ||||||||||||||||||||  ||| ||| |||| ||| | || ||||||||||||||   | | ||   || ||| |||||||| ||||| ||||| ||    
T  18463227 cttggccatttagaggatgggatctagacataattggtaaaatcaaacctggttcgtcgggaagacatcgatacatgttggttgggatagattattttac 18463326  T
Q  134 caaatgggtagaagccatccatttaagaaaggttattcaagatgtggtcattagtttcattcaaaaccatattttggataggtttgaaattctagaaact 233  Q
    |||||||||||||| |||||  ||| || | |||| |||||| ||||| |||| |||||||||||| ||||||||   ||| |||| ||||| | |||||    
T  18463327 caaatgggtagaagtcatcccattacgagatgttaatcaagaagtggttattaatttcattcaaaatcatattttatgtagatttggaattccataaact 18463426  T
Q  234 atcaccactgatca-ggatcagtctttataggcnnnnnnnntggtacgatttgctaaccaaacaagtttcaaattgttaacttcgacgccatattatgct 332  Q
    ||  ||||| |||| |||||||| |  | | |         |||||| |||| | || |||||||| |||||| ||||||||||||| | ||||||||||    
T  18463427 atttccacttatcaaggatcagtttacacaag-acagaaaatggtacaattttccaatcaaacaagattcaaactgttaacttcgacactatattatgct 18463525  T
Q  333 caagcaaatggtcaagtcgaagca 356  Q
    ||||||||||||||||||||||||    
T  18463526 caagcaaatggtcaagtcgaagca 18463549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 14163378 - 14163317
Alignment:
Q  307 tgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaac 368  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||| |||||| | |||||||    
T  14163378 tgttaacttcgacaccatattatgcccaagcaaatggtcaagtcggagcagcaattaaaaac 14163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 24254649 - 24254595
Alignment:
Q  312 acttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaa 366  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||    
T  24254649 acttcgacaccacattatgctcaagcaaatggtcaagtcgaagctgccaataaaa 24254595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 9023245 - 9023304
Alignment:
Q  288 aaccaaacaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaa 347  Q
    ||||||||||||||||| ||| ||| ||||||  |||||||||||||| |||||||||||    
T  9023245 aaccaaacaagtttcaagttgctaatttcgacatcatattatgctcaaacaaatggtcaa 9023304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 14338855 - 14338800
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  14338855 aaattgctaacttcgacaccatactatgcacaagcaaatggtcaagtggaagcagc 14338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 14145463 - 14145682
Alignment:
Q  28 taaagccttggccatttagaggatggactctggacgtaatcggtgagattaaacctggttcgtcaaaagggcacaaatgcatattggttggaatagacta 127  Q
    |||| ||||||||||||||||||||| |||| || ||||| ||||| || |||||| |||| |||  | |  |   || |||||||||| ||||||||||    
T  14145463 taaaaccttggccatttagaggatgggctctagatgtaattggtgaaataaaacctagttcctcaggaagaaatcgatacatattggttagaatagacta 14145562  T
Q  128 tttcaccaaatgggtagaagccatccatttaagaaaggttattcaagatgtggtcattagtttcattcaaaaccatattttggataggtttgaaattcta 227  Q
    ||| ||||||||||||||||| ||||    || | | || |  ||||| ||||| |||| ||||||||| || ||||||||   |||||||| ||||| |    
T  14145563 ttttaccaaatgggtagaagctatcctacaaaaagatgtaacccaagaagtggttattaatttcattcagaatcatattttatgtaggtttggaattcca 14145662  T
Q  228 gaaactatcaccactgatca 247  Q
     ||| ||| |||||||||||    
T  14145663 taaagtattaccactgatca 14145682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 12028606 - 12028548
Alignment:
Q  300 ttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||| | |||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  12028606 ttcaaattgcttacttcgacaccatactatgcgcaagcaaatggtcaagttgaagcagc 12028548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 13033110 - 13033168
Alignment:
Q  300 ttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||| |||||||| |  |||||||||| ||||||||||||||||| ||||||||    
T  13033110 ttcaaattgataacttcgtcagcatattatgcgcaagcaaatggtcaagttgaagcagc 13033168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 367
Target Start/End: Complemental strand, 138722 - 138653
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaa 367  Q
    |||| ||| |||| || ||||| |||||||||||||||||||||||||| ||||||| ||| | ||||||    
T  138722 gttttaaactgttgacgtcgacaccatattatgctcaagcaaatggtcaggtcgaagaagcaaataaaaa 138653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 7361644 - 7361589
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||||| |||||||||| ||||| ||||| || |||||||||||||| ||||||||    
T  7361644 aaattgctaacttcgacaccatactatgcacaggcaaatggtcaagttgaagcagc 7361589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 14689641 - 14689571
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaacctcat 373  Q
    |||||| |||||||||| ||||| ||||| || ||||||||||| || |||||||| | ||||||| ||||    
T  14689641 aaattgctaacttcgacaccatactatgcacaggcaaatggtcaggttgaagcagcaaataaaaacatcat 14689571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 10156898 - 10156958
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| |||||| |||| ||||| |||||||| || |||||||||||||| || ||||||||    
T  10156898 gttttaaattgctaacctcgacaccatattaagcacaagcaaatggtcaggttgaagcagc 10156958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 10786146 - 10786205
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| |||||| |||||||||| | ||| ||||| ||||||||||||||||| ||||||||    
T  10786146 gttttaaattgctaacttcgacac-atactatgcacaagcaaatggtcaagttgaagcagc 10786205  T

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Target: scaffold0023 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 7477 - 7537
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||| |||||||||||||||||    
T  7477 gtttcaaattgctaacttcgacaccatactatgcacaagcaaacggtcaagtcgaagcagc 7537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 21297915 - 21297975
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||||| |||||||||| ||||| |||||  |||||||||||||||||||||||||    
T  21297915 gtttcaaattgctaacttcgacaccatactatgcataagcaaatggtcaagtcgaagcagc 21297975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 22690438 - 22690381
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagc 355  Q
    ||||||||||| |||||||||| ||||| ||||| |||||||||||| ||||||||||    
T  22690438 gtttcaaattgctaacttcgacaccatactatgcacaagcaaatggttaagtcgaagc 22690381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 43362541 - 43362597
Alignment:
Q  310 taacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaa 366  Q
    |||||| ||| ||||||||||||||| ||||||||||| ||||||| |||| |||||    
T  43362541 taacttagacaccatattatgctcaaccaaatggtcaaatcgaagctgccaataaaa 43362597  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 22800996 - 22800936
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| |||||| ||||||| || ||||||||| | |||||||||||||| || ||||||||    
T  22800996 gttttaaattgataacttcaacaccatattatccacaagcaaatggtcaggttgaagcagc 22800936  T

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Target: scaffold0217 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 510
Target Start/End: Complemental strand, 27092 - 27029
Alignment:
Q  447 tatagaacttctcttagagaatcaactaacgcaactccctttaggcttacatttggacatgatg 510  Q
    ||||||||||| | |||||| ||||||||  |||||||||||||||| ||||||||||||||||    
T  27092 tatagaacttcccctagagagtcaactaaaacaactccctttaggctcacatttggacatgatg 27029  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 23810477 - 23810314
Alignment:
Q  33 ccttggccatttagaggatggactctggacgtaatcggtgagattaaacctggttcgtcaaaagggcacaaatgcatattggttggaatagactatttca 132  Q
    ||||||||||| ||||| ||| || | || ||||| || || |||||||||   || || ||||| || |||| ||| ||||| ||||||||||||||||    
T  23810477 ccttggccattcagaggttgggctttagatgtaattggggaaattaaacctaaatcatcgaaaggccataaatacatcttggtgggaatagactatttca 23810378  T
Q  133 ccaaatgggtagaagccatccatttaagaaaggttattcaagatgtggtcattagtttcattca 196  Q
    |||||||| |||| || |||| ||||| | |||||| |||||| |  || |||| |||||||||    
T  23810377 ccaaatggatagaggcgatccctttaaaagaggttactcaagaggacgttattaatttcattca 23810314  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 24920480 - 24920538
Alignment:
Q  300 ttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||| |||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  24920480 ttcaaattgctaacttcgacaccctattatgcacaagcaaatggtcaagttgaagcagc 24920538  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 23810212 - 23810152
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| ||||| ||||||||||| |||||||||||  ||||||||||||| ||||| |||||    
T  23810212 gttttaaattattaacttcgacaccatattatgcctaagcaaatggtcaggtcgaggcagc 23810152  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 23622657 - 23622606
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaag 354  Q
    |||||| |||||||||| ||||||||||| ||||| |||||||| |||||||    
T  23622657 aaattgctaacttcgacaccatattatgcgcaagcgaatggtcaggtcgaag 23622606  T

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Target: scaffold0051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 73421 - 73473
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagc 355  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||| |||||    
T  73421 aaattgctaacttcgatgccatattatgcacaagcaaatggtcaagttgaagc 73473  T

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Target: scaffold0046 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 56816 - 56876
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||||| |||||||||| ||||| ||||| ||||||||  ||||||||||||||||    
T  56816 gtttcaaattgctaacttcgacaccatactatgcacaagcaaacagtcaagtcgaagcagc 56876  T

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Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 2926 - 3001
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaacctcat 373  Q
    |||| ||||| ||||| ||| | | ||||||||| |||||||||||||||||||||||||| | ||||| ||||||    
T  2926 gttttaaattattaacctcgtcacgatattatgcccaagcaaatggtcaagtcgaagcagcaaataaaagcctcat 3001  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 13781188 - 13781251
Alignment:
Q  291 caaacaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaag 354  Q
    |||||| | |||||| |||| |||||||| |||||||||||||| | |||||||||||||||||    
T  13781188 caaacatgattcaaactgttgacttcgacaccatattatgctcaggaaaatggtcaagtcgaag 13781251  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 358
Target Start/End: Complemental strand, 19031378 - 19031323
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||||| |||||||||| ||||| ||||| ||||||||||||||||| ||||||||    
T  19031378 aaattgctaacttcgacaccatactatgcgcaagcaaatggtcaagttgaagcagc 19031323  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Complemental strand, 16145731 - 16145678
Alignment:
Q  312 acttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaa 365  Q
    |||||||| |||||||||||| |||||||||||||| | ||||| |||| ||||    
T  16145731 acttcgacaccatattatgctgaagcaaatggtcaatttgaagctgccaataaa 16145678  T

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Target: scaffold0239 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 25914 - 25856
Alignment:
Q  300 ttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||| |||||||||  ||||| ||||| ||||||||||||||||| ||||||||    
T  25914 ttcaaattgctaacttcgataccatactatgcgcaagcaaatggtcaagttgaagcagc 25856  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 49497 - 49569
Alignment:
Q  282 tttgctaaccaaacaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaag 354  Q
    ||||| ||||||||| ||||||| ||| | ||||| || |||| ||||||| |||||||||||||||| ||||    
T  49497 tttgccaaccaaacaggtttcaagttgctcacttcaacaccatgttatgctaaagcaaatggtcaagttgaag 49569  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 94969 - 95029
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||||| | |||||||| ||||  ||||| |||||||| |||||||||||||||||    
T  94969 gtttcaaattgctgacttcgacaccatgctatgcacaagcaaacggtcaagtcgaagcagc 95029  T

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Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 122988 - 122928
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    |||| |||||| |||| ||||| ||||||||||| |||||||||||||| || ||||||||    
T  122988 gttttaaattgctaacctcgacaccatattatgcacaagcaaatggtcaggttgaagcagc 122928  T

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Target: scaffold0040 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 34961 - 35004
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtca 346  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||    
T  34961 aaattgctaacctcgacgccatattatgcacaagcaaatggtca 35004  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 24666091 - 24666024
Alignment:
Q  288 aaccaaacaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagc 355  Q
    ||||||||| |||| || ||| | |||||||| | |||||||||||||| |||||||||||| |||||    
T  24666091 aaccaaacatgttttaagttgctcacttcgacactatattatgctcaagaaaatggtcaagttgaagc 24666024  T

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Target: scaffold1900 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1900
Description:

Target: scaffold1900; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 621 - 563
Alignment:
Q  300 ttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagc 358  Q
    ||||||||| | |||||||| | ||||||||| ||||| || |||||||||||||||||    
T  621 ttcaaattgctgacttcgacacaatattatgcacaagcgaacggtcaagtcgaagcagc 563  T

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Target: scaffold0241 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 18692 - 18749
Alignment:
Q  298 gtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagc 355  Q
    |||| |||||| |||| ||||| ||||||||||| |||||||||||||| || |||||    
T  18692 gttttaaattgctaacctcgacaccatattatgcacaagcaaatggtcaggttgaagc 18749  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 36201 - 36274
Alignment:
Q  303 aaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtcgaagcagccagtaaaaacctcatcac 376  Q
    |||||| |||||||||||||||| ||||| ||||||||||| || || ||||| || |  |||||| |||||||    
T  36201 aaattgataacttcgacgccatactatgcacaagcaaatggacaggttgaagcggcaaacaaaaacatcatcac 36274  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 33863 - 33814
Alignment:
Q  294 acaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatgg 343  Q
    ||||| || |||||| |||||||||||||||| ||||| |||||||||||    
T  33863 acaagctttaaattgataacttcgacgccatactatgcacaagcaaatgg 33814  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 371963 - 371895
Alignment:
Q  282 tttgctaaccaaacaagtttcaaattgttaacttcgacgccatattatgctcaagcaaatggtcaagtc 350  Q
    ||||| |||| ||||||||| || ||| | |||||||| | ||||||||||||| ||||||| ||||||    
T  371963 tttgccaacctaacaagttttaagttgctcacttcgacactatattatgctcaaacaaatggccaagtc 371895  T

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