View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_15 (Length: 492)
Name: NF12051_low_15
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 4952118 - 4951672
Alignment:
| Q |
18 |
agatcaaggatgagaaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaaactaaaccatg |
117 |
Q |
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| T |
4952118 |
agatcaaggatgaggaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaaactaaaccatg |
4952019 |
T |
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| Q |
118 |
tgtctgagtcccatgacaaagttgttcaagagaatacacgtcttaaagaagaaacttttgatcttcgtcaaatggtagctgacatgcaaattggtaactc |
217 |
Q |
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| T |
4952018 |
tgtctgagtcacatgacacagttgttcaagagaatgcacgacttaaagaagaaacttttgatcttcgtcaaatggtagctgacatgcaaattggtaactc |
4951919 |
T |
|
| Q |
218 |
ttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacataaagatgattcctctaaaattcatgattgagaatgagatgagact |
317 |
Q |
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| T |
4951918 |
ttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgattcctctaaaattcatgattgagaatgagatgagact |
4951819 |
T |
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| Q |
318 |
attttccagtttccattataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatattttacttgtccatattca |
417 |
Q |
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| T |
4951818 |
attttctagtttccattataaagatataaattactctatgttccttctttttaactttctatgatccatccacctgctatattttacttgtccatattca |
4951719 |
T |
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| Q |
418 |
ttggacaagtatgagttttagaagcttatatatgaaataaaagcttta |
465 |
Q |
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| T |
4951718 |
ttggacaagtatgagttttagaagcatatatat-aaataaaagcttta |
4951672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 10483554 - 10483980
Alignment:
| Q |
18 |
agatcaaggatgagaaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaaactaaaccatg |
117 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
10483554 |
agatcaaggatgaggaaacaaaagcacttagatgaactttggtcacaagtggtgagactcagaactgaaaatcataaccttgttgataaactaaaccatg |
10483653 |
T |
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| Q |
118 |
tgtctgagtcccatgacaaagttgttcaagagaatacacgtcttaaagaagaaacttttgatcttcgtcaaatggtagctgacatgcaaattggtaactc |
217 |
Q |
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| T |
10483654 |
tgtctgagtcacatgacaaagttgttcaagagaatgcaagacttaaggaagaaacttttgatcttcgccaaatggtagctgacatgcaaattggtaactc |
10483753 |
T |
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| Q |
218 |
ttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacataaa---gatgattcctctaaaattcatgattgagaatgagatgag |
314 |
Q |
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| T |
10483754 |
ttttccttgcaacatggaagatttatgtgaaattccatgcaacacatctcaacacaaagatgatgattcctctaaaattcatgat------tgagatgac |
10483847 |
T |
|
| Q |
315 |
actattttccagtttccattataaagatataaattactctatgttccttctttttaattttctatgatccatccacctgctatattttacttgtccatat |
414 |
Q |
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| T |
10483848 |
actattttcatgtttccattataa--------------cgatgttgcttcttttaaattttctatgatcca--------------tttacttgtcc--at |
10483917 |
T |
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| Q |
415 |
tca-ttggacaagtatgagttttagaagcttatatatgaaataaaagctttagatgttgatgt |
476 |
Q |
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||| ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
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| T |
10483918 |
tcatttggacaagtatgagttttagaagcataaatatgaaataaaagctttagatattgatgt |
10483980 |
T |
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