View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12051_low_16 (Length: 449)
Name: NF12051_low_16
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 228 - 443
Target Start/End: Complemental strand, 16640157 - 16639942
Alignment:
| Q |
228 |
gaacatgactaaattaatgtccaacaaaacaacctagtaatactgcaattctaaccttctagcacacaaagtacnnnnnnncttcctcttgatcttaaaa |
327 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
16640157 |
gaacatgactaaattaatgtccaaaaaaacaacctagtaatactgcaattctaaccttctagcacacaaagtacaaaaaaacttcctcttaatcttaaaa |
16640058 |
T |
|
| Q |
328 |
cacataggcaaaaaacaaaacctccattgcatttcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttccta |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16640057 |
cacataggcaaaaaacaaaacctccattgcatctcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttccta |
16639958 |
T |
|
| Q |
428 |
attccttctctgcttc |
443 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
16639957 |
attccttctcttcttc |
16639942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 16640285 - 16640240
Alignment:
| Q |
116 |
aataaaccacactctaatttcccatccatttgcacaaaattgaacc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16640285 |
aataaaccacactctaatttcccatccatttgcacaaaattgaacc |
16640240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 52764803 - 52764873
Alignment:
| Q |
361 |
tcaacatccatagcttcaactttgccaccacaataaggacaacaacctgatgctttttgtcttcctaattc |
431 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||| |
|
|
| T |
52764803 |
tcaacatccatggcttcaactttgccaccacaataaggacaagaaccaggtgcttgttgtcttcccaattc |
52764873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 436
Target Start/End: Original strand, 52770756 - 52770881
Alignment:
| Q |
311 |
tcctcttgatcttaaaacacataggcaaaaaacaaaacctccattgcatttcaacatccatagcttcaactttgccaccacaataaggacaacaacctga |
410 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| || | | | |||| | ||||||||||| |||||||||||||||||||| ||||||||| |||| | |
|
|
| T |
52770756 |
tcctcttgatctgaaagcacataggtaaaaagcagagcttggattgaacctcaacatccatggcttcaactttgccaccacagtaaggacaagaaccagg |
52770855 |
T |
|
| Q |
411 |
tgctttttgtcttcctaattccttct |
436 |
Q |
| |
|
||||| |||||||| |||||||||| |
|
|
| T |
52770856 |
tgcttgttgtcttctcaattccttct |
52770881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University