View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_17 (Length: 441)
Name: NF12051_low_17
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 34639959 - 34640171
Alignment:
| Q |
8 |
cacagacaatttattaaagaactcatgaagtgtttatatgagtgcaaatatctaggttagtgaattcaagtaagtttttgtttgttttaaaggcaaatga |
107 |
Q |
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| T |
34639959 |
cacagacaatttattaaagaactcatgaagtgtttatatgagtgcaaatatctag-ttagtgaattcaagtaagtttttgtttgttttaaaggcaaatga |
34640057 |
T |
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| Q |
108 |
tgttatataataaccacgtcgagagacaagatgactaaggatggaacaatacaagtaaaagaaagaagaacaatttagctcactagaaactcaat--ttt |
205 |
Q |
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| T |
34640058 |
tgttatataataaccacgtcgagagacaagatgactaaggatggaacaatgcaagtaaaagaaagaagaacaatttagctcactagaaactcaataattt |
34640157 |
T |
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| Q |
206 |
gaactcaaatagtt |
219 |
Q |
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| T |
34640158 |
gaactcaaatagtt |
34640171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 284 - 397
Target Start/End: Original strand, 34640236 - 34640349
Alignment:
| Q |
284 |
tctgagactttacttacttccagaggtatctaaaatgatccaattttggtatgtgatacaagtataatacaagtaaaataaagaagcaattaatatcatt |
383 |
Q |
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| T |
34640236 |
tctgagactttacttacttccagaggcatctaaaatgatccaattttggtatgtaatacaagtataatacaagtaaaataaagaagcaattaatatcatt |
34640335 |
T |
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| Q |
384 |
ttggaacaatacaa |
397 |
Q |
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| T |
34640336 |
ttggaacaatacaa |
34640349 |
T |
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