View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_21 (Length: 418)
Name: NF12051_low_21
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 35693770 - 35693377
Alignment:
| Q |
19 |
tttttcataattaaaacgattaattaagagtaccgttaaatatccctnnnnnnn-gagtactgttaaaatactctttctcctcccttttctctaattata |
117 |
Q |
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| T |
35693770 |
tttttcataattaaaatgattaattaagagtaccgttaaatatccctaaaaaaaagagtactgttaaaatactctttctcctctcttttctctaattata |
35693671 |
T |
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| Q |
118 |
agcacctattgctttttacaaatgtattaagaaaagtaggaaaatgaattctcttcatttaaactctctcaatttatttttaatcgttaaatctcaacca |
217 |
Q |
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| T |
35693670 |
agcacctattgctttttacaaatatattaagaaaagtaggaaaatgaattctcttcatttaaactctctcaatttatttttaattgttaaatctcaacca |
35693571 |
T |
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| Q |
218 |
tcaaattcaatatcctttttccttataattttatatcacattttttctcctatgtttgattgcagaaatgtaacaactaagagaaatagagagaatttaa |
317 |
Q |
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| T |
35693570 |
tcaaattcaatatcctttttccttataattttatatcgcattttttctcctatgtttgattgcagaaatgtaacaactaagggaaatagagagaatttaa |
35693471 |
T |
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| Q |
318 |
atggagagaattcattctctaaaattacaaagaaatatggattgaatttgatggttgtgatataacaatttagagaaattaaagtgttcctatg |
411 |
Q |
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| T |
35693470 |
atggagagaattcattctctaaaattacaaagaaatatggattgaatttgaaggttgtgatataacaattgagagaaattaaagtgtttctatg |
35693377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 11940278 - 11940234
Alignment:
| Q |
208 |
atctcaaccatcaaattcaatat-cctttttccttataattttat |
251 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||| |
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| T |
11940278 |
atctcaaccatcaaattcaatttccctttttctttataattttat |
11940234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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