View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_24 (Length: 409)
Name: NF12051_low_24
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 43781292 - 43781682
Alignment:
| Q |
1 |
aaaggaaaccttttcagtatatagttggatgcgagcattggaaggatttggttttgagtgttcaagaaggggttttgattcctagacccgagactgaact |
100 |
Q |
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| T |
43781292 |
aaaggaaaccttttcagtatatagttggatgcgagcattggaaggatttggttttgagtgttcaagaaggggttttgattcctagacccgagactgaact |
43781391 |
T |
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| Q |
101 |
tattgttgatttggtttctgatgttgtgtcaaagaatgagggtttgaaaagaggggtttggtctgatttaggaactggaagtggtgctcttgctattggc |
200 |
Q |
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| T |
43781392 |
tattgttgatttggtttctgatgttgtgtcaaagaatgagggtttgaaaagaggggtttgggctgatttagggactggaagtggtgctcttgctattggc |
43781491 |
T |
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| Q |
201 |
attggcagggttttaggagatggtggaaaggttattgcgtctgatttaagtcctgtggctgttgctgttgcaggttacaatgtgcaaaggtattctttgc |
300 |
Q |
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| T |
43781492 |
attggcagggttttaggagatggtggaaaggttattgggtctgatttaagtcctgtggctgttgctgttgcaggttacaatgtgcaaaggtattctttgc |
43781591 |
T |
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| Q |
301 |
aggttagaaattcaagctttcagcttccatggtttacattctcttttattgttcagtcaaagttatatatgtcgattttgtatctggagac |
391 |
Q |
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| T |
43781592 |
aggttagaaattcaagctttcagcttccatggtttacattctcttttattgttcagtcaaagttatatatgtcgattttgtatctggagac |
43781682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 37979964 - 37980024
Alignment:
| Q |
100 |
ttattgttgatttggtttctgatgttgtgtcaaagaatgagggtttgaaaagaggggtttgg |
161 |
Q |
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| T |
37979964 |
ttattgttgatttggtttttgatg-tgtgtcaaataatgaggttttgaaaagtggtgtttgg |
37980024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 64 - 359
Target Start/End: Original strand, 15956985 - 15957281
Alignment:
| Q |
64 |
aagaaggggttttgattcctagacccgagactgaacttattgttgatttggtttctgatgttgtgtcaaagaatgagggtttgaaaagaggggtttggtc |
163 |
Q |
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| T |
15956985 |
aagaagggcttttgattcctagacctgagactgaacttactgttgatttggtttgtgatgttgcttcaaagaatgaggatttgaaaagaggggtttgggc |
15957084 |
T |
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| Q |
164 |
tgatttaggaactggaagtggtgctcttgctattggcattggcagggttttaggagatggtggaaaggttattgcgtctgatttaagtcctgtggctgtt |
263 |
Q |
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| T |
15957085 |
tgatttagggtctggaagtggtgctcttgctattggcattggtagggttttaggagatcgtggaaaggttattgcgtccgatttaagtcatgtggctgtt |
15957184 |
T |
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| Q |
264 |
gctgttgcaggttacaatgtgcaaaggtattctttgcaggttagaaattcaagc--tttcagcttccatggtttacattctcttttattgttcagtca |
359 |
Q |
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| T |
15957185 |
gctgttgc-ggttgcaatgtgcagaggtattgcttgcaggttagaaattcaagccttttcaacctccatgagttatattcttttttgttgttaagtca |
15957281 |
T |
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