View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12051_low_32 (Length: 242)

Name: NF12051_low_32
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12051_low_32
NF12051_low_32
[»] chr6 (2 HSPs)
chr6 (78-225)||(10832552-10832699)
chr6 (9-78)||(24348385-24348455)
[»] chr7 (1 HSPs)
chr7 (9-73)||(40302540-40302605)
[»] chr8 (1 HSPs)
chr8 (9-72)||(15053590-15053654)
[»] chr4 (7 HSPs)
chr4 (9-74)||(13110518-13110584)
chr4 (9-69)||(38173517-38173578)
chr4 (9-70)||(3533356-3533418)
chr4 (9-73)||(3618502-3618567)
chr4 (9-73)||(33604615-33604680)
chr4 (10-73)||(28899290-28899354)
chr4 (9-72)||(33523229-33523293)
[»] chr3 (4 HSPs)
chr3 (9-72)||(41183234-41183298)
chr3 (9-74)||(6048745-6048811)
chr3 (9-73)||(44084268-44084333)
chr3 (9-73)||(51999286-51999351)
[»] chr5 (4 HSPs)
chr5 (9-70)||(42807049-42807111)
chr5 (12-70)||(30648165-30648224)
chr5 (9-72)||(27407092-27407156)
chr5 (9-72)||(25670955-25671019)
[»] chr1 (3 HSPs)
chr1 (9-70)||(48404288-48404350)
chr1 (9-70)||(48388157-48388219)
chr1 (9-75)||(45456200-45456267)
[»] scaffold0054 (1 HSPs)
scaffold0054 (9-75)||(57792-57859)
[»] chr2 (4 HSPs)
chr2 (9-73)||(22351664-22351729)
chr2 (9-73)||(7588554-7588619)
chr2 (9-72)||(38997308-38997372)
chr2 (9-60)||(43021713-43021765)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 10832699 - 10832552
Alignment:
Q  78 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctctgggttctgggcaatcagagaattgagaagctttgttaagattgaaagata 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10832699 agagagaaatcaatttgacagtttatcttgaaattgtcagctcaatctctgggttctgggcaatcagagaattcagaagctttgttaagattgaaagata 10832600  T
Q  178 aaagagaaagatgcatctatggccaacaaagaatttgagagattcatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10832599 aaagagaaagatgcatctatggccaacaaagaatttgagagattcatt 10832552  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 24348455 - 24348385
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaaggaaaa 78  Q
    |||||||||||||||||||||||| || | || ||||| |||| | ||||||||| |||||||||| ||||    
T  24348455 gttgggaattgaaaaagtgggtgttgatggttattgaaaattttcaaccattgtatatggtctaagaaaaa 24348385  T

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Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 40302540 - 40302605
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgag-attgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  40302540 gttgggaattgaaaaaatgggtgtcgaggattgttgaatatttgtgaccattgtaaatggtctaag 40302605  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 15053654 - 15053590
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||    
T  15053654 gttgggaattgaaaaagtgggtgttgatgattgttgaatatttgtgaccattgtaaatggtctaa 15053590  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 13110584 - 13110518
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtctaagg 74  Q
    ||||||||||||||||||||||||  ||  |||||||||||||| ||||||||||||||||||||||    
T  13110584 gttgggaattgaaaaagtgggtgttaagcgttgttgaatatttgtgaccattgtaaatggtctaagg 13110518  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 38173578 - 38173517
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtc 69  Q
    |||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||    
T  38173578 gttgggaattgaaaaagtgggtgttgagggttgttgaatatttgtgaccattgtaaatggtc 38173517  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 3533356 - 3533418
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtct 70  Q
    |||||||||||||||||||||||| || | ||||||||||||||  |||||||||||||||||    
T  3533356 gttgggaattgaaaaagtgggtgttgaaggttgttgaatatttgttaccattgtaaatggtct 3533418  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 3618502 - 3618567
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| | || ||||||||| | |   ||||||||||||||||||||    
T  3618502 gttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattgtaaatggtctaag 3618567  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33604680 - 33604615
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| || | || ||||| |||| | || |||||||||||||||||    
T  33604680 gttgggaattgaaaaagtgggtgttgagggttattgaaaattttcaactattgtaaatggtctaag 33604615  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 28899354 - 28899290
Alignment:
Q  10 ttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    ||||||||||||||||||||||| || | ||||||||| | |   ||||||||||||||||||||    
T  28899354 ttgggaattgaaaaagtgggtgttgagggttgttgaatgtgtttaaccattgtaaatggtctaag 28899290  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 33523293 - 33523229
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    |||||||||||||||||||| ||| |||  || ||||| |||| | |||||||||||||||||||    
T  33523293 gttgggaattgaaaaagtggatgttgagggttattgaaaattttcaaccattgtaaatggtctaa 33523229  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41183298 - 41183234
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    |||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||| |||||    
T  41183298 gttgggaattgaaaaagtgggtgttgagggttgttgaatatttgtgaccattgtaaatgatctaa 41183234  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 6048745 - 6048811
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaagg 74  Q
    |||||||||||||||||||||||| || | |||||||||||| |  |||||||||||||||||||||    
T  6048745 gttgggaattgaaaaagtgggtgttgaaggttgttgaatattagttaccattgtaaatggtctaagg 6048811  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 44084333 - 44084268
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| | || ||||||||| | |   ||||||||||||||||||||    
T  44084333 gttgggaattgaaaaagtgggtgttgaaggttgttgaatttgttttaccattgtaaatggtctaag 44084268  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 51999286 - 51999351
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| | || ||||||||||| |    |||||||||||||||||||    
T  51999286 gttgggaattgaaaaagtgggtgttgaaggttgttgaatatattttgccattgtaaatggtctaag 51999351  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 42807049 - 42807111
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtct 70  Q
    |||| ||||||||||||||||||| |||  |||||||||||||| ||||||||||||||||||    
T  42807049 gttgagaattgaaaaagtgggtgttgagggttgttgaatatttgtgaccattgtaaatggtct 42807111  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 30648165 - 30648224
Alignment:
Q  12 gggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtct 70  Q
    ||||||||||||||||||||| |||  ||||||||| |||| ||||||||||||||||||    
T  30648165 gggaattgaaaaagtgggtgttgagggttgttgaatgtttgtgaccattgtaaatggtct 30648224  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 27407092 - 27407156
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    ||||||||||||||||||| ||||  | | ||||||||| |||| ||||||||||||||||||||    
T  27407092 gttgggaattgaaaaagtgagtgttaaaggttgttgaatgtttgtgaccattgtaaatggtctaa 27407156  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 25670955 - 25671019
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    |||||||||||||||||||||||| | || || ||||| |||||  ||||||||| |||||||||    
T  25670955 gttgggaattgaaaaagtgggtgttgaaggttattgaaaatttgtaaccattgtacatggtctaa 25671019  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 48404350 - 48404288
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcgaga-ttgttgaatatttgcgaccattgtaaatggtct 70  Q
    |||||||||||||||||| ||||| |||  |||||||||||||| ||||||||||||||||||    
T  48404350 gttgggaattgaaaaagttggtgttgagggttgttgaatatttgtgaccattgtaaatggtct 48404288  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 48388157 - 48388219
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtct 70  Q
    |||||||||||||||||||||||| | || |||||||||||| |  |||||||||||||||||    
T  48388157 gttgggaattgaaaaagtgggtgttgaaggttgttgaatattagttaccattgtaaatggtct 48388219  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 45456200 - 45456267
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaagga 75  Q
    |||||||||||||||||||||||| || | || ||||| |||| | ||||||||||||||||| ||||    
T  45456200 gttgggaattgaaaaagtgggtgttgagggttattgaaaattttcaaccattgtaaatggtcttagga 45456267  T

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Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 57792 - 57859
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcga-gattgttgaatatttgcgaccattgtaaatggtctaagga 75  Q
    |||||||||||||||||||||||| || | ||||||||| |||| ||||||| |||||||||| ||||    
T  57792 gttgggaattgaaaaagtgggtgttgagggttgttgaatgtttgtgaccattataaatggtcttagga 57859  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 22351664 - 22351729
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| | || ||||||||||||    ||||||||||||||||||||    
T  22351664 gttgggaattgaaaaagtgggtgttgaaggttgttgaatattgattaccattgtaaatggtctaag 22351729  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 7588554 - 7588619
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaag 73  Q
    |||||||||||||||||||||||| | || ||||||||| | |   ||||||||||||||||||||    
T  7588554 gttgggaattgaaaaagtgggtgttgaaggttgttgaatgtattttaccattgtaaatggtctaag 7588619  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 38997308 - 38997372
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattgtaaatggtctaa 72  Q
    |||| ||||||||||||||||||| | || ||||||||  ||| | |||||||||||||||||||    
T  38997308 gttgcgaattgaaaaagtgggtgttgaaggttgttgaaacttttcaaccattgtaaatggtctaa 38997372  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 43021765 - 43021713
Alignment:
Q  9 gttgggaattgaaaaagtgggtgtcg-agattgttgaatatttgcgaccattg 60  Q
    |||||||||||||||||||||||| | || ||||||||||||||  |||||||    
T  43021765 gttgggaattgaaaaagtgggtgttgaaggttgttgaatatttgttaccattg 43021713  T

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