View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12051_low_37 (Length: 233)
Name: NF12051_low_37
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_37 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 3789575 - 3789805
Alignment:
| Q |
1 |
tttatctaaccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789575 |
tttatctaaccattctaagcaagttgagtcttcttgccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgat |
3789674 |
T |
|
| Q |
101 |
atggaaaatacaccaggttcaagatcacaagtagagttgcaaagccaccattctccaaaatttatagtttgtatctcttgcacaaaatgatcaaagaaga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789675 |
atggaaaatacaccaggctcaagatcacaagtagtgttgcaaagccaccattctccaaaatttatagtttgtatctcttgcacaaaatgatcaaagaaga |
3789774 |
T |
|
| Q |
201 |
tcttatctacgccgcgccatgggaagtttgt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3789775 |
tcttatctacgccgcgccatgggaagtttgt |
3789805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3800532 - 3800299
Alignment:
| Q |
1 |
tttatctaaccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800532 |
tttatctaaccaatctaagcaagttgagtcttcttgccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgat |
3800433 |
T |
|
| Q |
101 |
atggaaaatacaccaggttcaagatcacaagtagagttgcaaagccaccattctccaaa---atttatagtttgtatctcttgcacaaaatgatcaaaga |
197 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||| | || |||||| | |
|
|
| T |
3800432 |
atggaaaatacaccaggctcaagatcacaagtagtgttgcaaagccaccattctccaaaattatttaaagtttgcatctcttgcaccatattatcaaata |
3800333 |
T |
|
| Q |
198 |
agatcttatctacgccgcgccatgggaagtttgt |
231 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||| |
|
|
| T |
3800332 |
agatcttatctacgccacgccatgggatgtttgt |
3800299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 3768240 - 3768343
Alignment:
| Q |
2 |
ttatctaaccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgata |
101 |
Q |
| |
|
||||||| |||||||||| |||| |||||||| ||| ||||||||||||||| | | | ||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
3768240 |
ttatctagccaatctaaggaagtcatgtcttcttgccagaatgaacttttgttgctatcattttccatcaatgggccaattggtaggaactttggtgaga |
3768339 |
T |
|
| Q |
102 |
tgga |
105 |
Q |
| |
|
|||| |
|
|
| T |
3768340 |
tgga |
3768343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 3780526 - 3780696
Alignment:
| Q |
10 |
ccaatctaagcaagttgagtcttctttccataatgaacttttgttgttgttactttccatcaatggaccaattggtaggaactttggtgatatggaaaat |
109 |
Q |
| |
|
||||||||| || |||| |||||||| ||| ||||||||| |||||| | || ||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3780526 |
ccaatctaaacatgttgcgtcttcttgccagaatgaacttgtgttgtcttcgattgacatgaatggaccaattggtagaaactttggtgatatggaaaat |
3780625 |
T |
|
| Q |
110 |
acaccaggttcaagatcacaagtagagttgcaaagccaccattctccaaaatttatagtttgtatctcttg |
180 |
Q |
| |
|
|| | || |||| | |||| | ||||||||||||||| |||||||| || || | ||| |||||||| |
|
|
| T |
3780626 |
gttgcatgctcgagattataagttgtgttgcaaagccaccaatctccaaacttcatggcttgcatctcttg |
3780696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 3755656 - 3755772
Alignment:
| Q |
63 |
tttccatcaatggaccaattggtaggaactttggtgatatggaaaatacaccaggttcaagatcacaagtagagttgcaaagccaccattctccaaaatt |
162 |
Q |
| |
|
||||||| ||||||||||||||||| || |||||||||| ||||| | | ||| |||||||| | ||| ||| ||||||||||||||||| ||||| |
|
|
| T |
3755656 |
tttccattaatggaccaattggtagaaattttggtgataaggaaattgcttcagcctcaagatccatactagtgttacaaagccaccattctcccaaatt |
3755755 |
T |
|
| Q |
163 |
tatagtttgtatctctt |
179 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
3755756 |
catattttgcatctctt |
3755772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University