View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_38 (Length: 230)
Name: NF12051_low_38
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 2787838 - 2787936
Alignment:
| Q |
126 |
aaaaggaacaatgtttgacatatttgcataacatgaaacataagataagaaatgacaaagtacaaacaaatgatcattatcattctcgaattgctggag |
224 |
Q |
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| T |
2787838 |
aaaaggaacaatgtttgacatatttgcataacatgaaacataagataagaaatgacaaagtacaaacaaatgatcattatcattctcgaattgctggag |
2787936 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 130
Target Start/End: Complemental strand, 2787654 - 2787607
Alignment:
| Q |
83 |
caagcatcaatgcacaaaagaatatggagcatgagccttgaagaaaag |
130 |
Q |
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| T |
2787654 |
caagcatcaatgcacaaaagaatatggagcatgagccttgaagaaaag |
2787607 |
T |
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