View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12051_low_4 (Length: 869)

Name: NF12051_low_4
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12051_low_4
NF12051_low_4
[»] chr7 (16 HSPs)
chr7 (545-851)||(20145813-20146119)
chr7 (545-833)||(14986989-14987278)
chr7 (545-833)||(15416600-15416889)
chr7 (545-849)||(2546914-2547215)
chr7 (629-845)||(17600539-17600754)
chr7 (549-811)||(24832402-24832670)
chr7 (629-851)||(3743380-3743608)
chr7 (642-804)||(4173452-4173615)
chr7 (384-477)||(2545771-2545864)
chr7 (396-537)||(20146231-20146371)
chr7 (399-541)||(14986744-14986882)
chr7 (399-541)||(15416355-15416493)
chr7 (397-516)||(4173104-4173222)
chr7 (649-753)||(10649240-10649344)
chr7 (668-800)||(18046371-18046501)
chr7 (395-431)||(2563197-2563233)
[»] chr8 (23 HSPs)
chr8 (545-851)||(28371034-28371341)
chr8 (630-846)||(9218079-9218298)
chr8 (285-541)||(28371450-28371705)
chr8 (396-514)||(23539981-23540099)
chr8 (629-760)||(23540219-23540351)
chr8 (722-848)||(10660970-10661095)
chr8 (629-801)||(9286326-9286498)
chr8 (629-763)||(16600591-16600725)
chr8 (567-729)||(10661748-10661911)
chr8 (648-790)||(13110204-13110345)
chr8 (399-477)||(10662109-10662187)
chr8 (713-760)||(26136195-26136242)
chr8 (650-790)||(18672125-18672261)
chr8 (695-801)||(22713661-22713767)
chr8 (629-693)||(24577344-24577408)
chr8 (300-477)||(16600980-16601159)
chr8 (651-786)||(25095052-25095187)
chr8 (629-801)||(27123582-27123752)
chr8 (698-749)||(15340931-15340983)
chr8 (698-749)||(15429996-15430048)
chr8 (698-749)||(15521300-15521352)
chr8 (698-749)||(41652021-41652073)
chr8 (740-786)||(9006930-9006976)
[»] chr2 (16 HSPs)
chr2 (545-853)||(18929235-18929543)
chr2 (559-851)||(26650839-26651133)
chr2 (304-541)||(18929651-18929887)
chr2 (642-845)||(17402729-17402932)
chr2 (617-832)||(25520385-25520601)
chr2 (642-801)||(31404046-31404205)
chr2 (300-480)||(17403198-17403377)
chr2 (397-516)||(26651281-26651400)
chr2 (545-680)||(19878981-19879117)
chr2 (545-801)||(24543870-24544126)
chr2 (642-768)||(20478255-20478379)
chr2 (332-452)||(25519999-25520118)
chr2 (640-753)||(29891263-29891376)
chr2 (698-749)||(28760672-28760724)
chr2 (700-786)||(17162015-17162101)
chr2 (700-801)||(17636690-17636791)
[»] chr5 (27 HSPs)
chr5 (558-825)||(19217911-19218177)
chr5 (553-811)||(20064388-20064653)
chr5 (545-811)||(20060802-20061075)
chr5 (545-760)||(20713228-20713443)
chr5 (544-760)||(23210024-23210240)
chr5 (545-811)||(20058550-20058824)
chr5 (327-534)||(20064063-20064265)
chr5 (547-760)||(25951315-25951528)
chr5 (396-516)||(25951664-25951783)
chr5 (397-516)||(20058300-20058418)
chr5 (396-494)||(21165557-21165655)
chr5 (394-516)||(23209772-23209893)
chr5 (629-729)||(23379373-23379474)
chr5 (642-801)||(17167275-17167433)
chr5 (695-801)||(19924022-19924128)
chr5 (653-849)||(23355581-23355777)
chr5 (668-801)||(24878356-24878489)
chr5 (397-516)||(20061207-20061323)
chr5 (695-801)||(19926749-19926855)
chr5 (647-780)||(17987487-17987619)
chr5 (397-441)||(19217727-19217771)
chr5 (443-516)||(20713575-20713647)
chr5 (370-478)||(24878782-24878889)
chr5 (366-441)||(17987914-17987988)
chr5 (366-476)||(22011479-22011588)
chr5 (818-849)||(24878288-24878319)
chr5 (700-749)||(31533052-31533102)
[»] chr3 (25 HSPs)
chr3 (545-851)||(15686859-15687166)
chr3 (617-844)||(24699049-24699275)
chr3 (629-845)||(26010836-26011055)
chr3 (649-832)||(13428733-13428914)
chr3 (299-477)||(9033046-9033225)
chr3 (544-849)||(4765605-4765916)
chr3 (629-824)||(4769742-4769937)
chr3 (545-760)||(7148790-7149005)
chr3 (629-851)||(4832516-4832740)
chr3 (545-768)||(9033398-9033622)
chr3 (545-757)||(29614512-29614724)
chr3 (329-518)||(4765286-4765475)
chr3 (653-795)||(23378488-23378631)
chr3 (300-513)||(4770096-4770307)
chr3 (629-760)||(16242937-16243069)
chr3 (398-516)||(24698727-24698845)
chr3 (397-477)||(15687340-15687420)
chr3 (399-492)||(16242605-16242699)
chr3 (397-515)||(29614037-29614155)
chr3 (668-791)||(27304424-27304547)
chr3 (410-518)||(4832190-4832300)
chr3 (717-791)||(8737234-8737308)
chr3 (717-791)||(9089472-9089546)
chr3 (740-786)||(13409833-13409879)
chr3 (397-480)||(13428406-13428488)
[»] chr6 (20 HSPs)
chr6 (623-851)||(22397548-22397777)
chr6 (545-760)||(16177304-16177519)
chr6 (300-513)||(17525233-17525444)
chr6 (544-756)||(15830026-15830238)
chr6 (642-842)||(17524797-17524998)
chr6 (629-760)||(1177214-1177349)
chr6 (330-458)||(31125745-31125872)
chr6 (668-801)||(18713709-18713842)
chr6 (668-801)||(17947890-17948023)
chr6 (696-801)||(14762985-14763090)
chr6 (303-477)||(22394009-22394179)
chr6 (545-811)||(31126065-31126351)
chr6 (397-481)||(16177672-16177759)
chr6 (438-515)||(1176918-1176994)
chr6 (698-799)||(28712360-28712461)
chr6 (698-749)||(13002854-13002906)
chr6 (408-494)||(32784447-32784534)
chr6 (716-786)||(25945846-25945916)
chr6 (700-749)||(24154179-24154229)
chr6 (698-742)||(10163272-10163317)
[»] chr4 (9 HSPs)
chr4 (617-851)||(11361595-11361830)
chr4 (643-844)||(9409168-9409370)
chr4 (396-539)||(11362017-11362160)
chr4 (629-801)||(16675086-16675259)
chr4 (698-760)||(5358040-5358102)
chr4 (629-801)||(4697454-4697626)
chr4 (739-786)||(18558469-18558516)
chr4 (698-748)||(26654144-26654195)
chr4 (363-441)||(10071001-10071078)
[»] chr1 (17 HSPs)
chr1 (545-806)||(20146169-20146437)
chr1 (545-825)||(11013745-11014027)
chr1 (545-795)||(33103021-33103273)
chr1 (400-537)||(20146549-20146686)
chr1 (397-518)||(11013493-11013614)
chr1 (629-801)||(36571655-36571826)
chr1 (630-757)||(20150435-20150563)
chr1 (285-478)||(22619579-22619770)
chr1 (631-781)||(22607834-22607984)
chr1 (545-757)||(13201980-13202192)
chr1 (629-787)||(17615272-17615430)
chr1 (668-758)||(22620063-22620153)
chr1 (729-801)||(20866221-20866293)
chr1 (617-680)||(13232737-13232801)
chr1 (740-779)||(20886571-20886610)
chr1 (699-749)||(23455191-23455242)
chr1 (396-478)||(17615684-17615766)
[»] scaffold0555 (2 HSPs)
scaffold0555 (545-806)||(5582-5851)
scaffold0555 (404-537)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (545-851)||(20793-21097)
scaffold0264 (407-518)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (545-801)||(374041-374294)
scaffold0002 (300-453)||(373696-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (629-801)||(17221-17392)
scaffold0337 (686-801)||(4546-4661)
[»] scaffold0795 (2 HSPs)
scaffold0795 (397-541)||(5725-5869)
scaffold0795 (545-605)||(5971-6031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (629-729)||(12991-13092)
[»] scaffold0161 (1 HSPs)
scaffold0161 (404-516)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (617-770)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (629-753)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (698-801)||(26930-27031)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 545 - 851
Target Start/End: Complemental strand, 20146119 - 20145813
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||| |||||  ||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaa 20146020  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    |||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20146019 aacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaacca 20145920  T
Q  744 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 843  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||    
T  20145919 cctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaag 20145821  T
Q  844 acgccaca 851  Q
    ||||||||    
T  20145820 acgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 545 - 833
Target Start/End: Original strand, 14986989 - 14987278
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 14987087  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14987088 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 14987187  T
Q  744 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 833  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987188 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 545 - 833
Target Start/End: Original strand, 15416600 - 15416889
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 15416698  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15416699 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 15416798  T
Q  744 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 833  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416799 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 545 - 849
Target Start/End: Complemental strand, 2547215 - 2546914
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||| |  |   | ||| ||||| | ||| ||||||||||||  ||    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttctagttatttttctatgtataagtaatagttttccatagggaa 2547116  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    |||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| |||||||||||||| |  ||||    
T  2547115 aacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagacca 2547016  T
Q  744 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 843  Q
    ||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  2547015 cctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaag 2546920  T
Q  844 acgcca 849  Q
    ||||||    
T  2546919 acgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 629 - 845
Target Start/End: Complemental strand, 17600754 - 17600539
Alignment:
Q  629 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||||||||||||||    
T  17600754 agttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaa 17600655  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 827  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||| || ||||||||| |  | |||| ||||| |||||||||||    
T  17600654 aggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaacc 17600557  T
Q  828 ttttttctgtcgaaagac 845  Q
    |||||| |||||||||||    
T  17600556 ttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 549 - 811
Target Start/End: Complemental strand, 24832670 - 24832402
Alignment:
Q  549 agacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacg 647  Q
    ||||||||| ||||||||||||||| |||| ||||  || |||| ||||||||| |  ||| |  || ||||| ||||| |||||| |||||  ||||||    
T  24832670 agacaagcggttgtctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacg 24832572  T
Q  648 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 747  Q
    ||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24832571 ggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccat 24832473  T
Q  748 tatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 811  Q
    |||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  24832472 tatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 629 - 851
Target Start/End: Complemental strand, 3743608 - 3743380
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 726  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||| |||||||  |    
T  3743608 agttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataaaaaatgtataca 3743509  T
Q  727 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt-aaactt-aatgccttaactttgctttt--a 822  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| | | ||||||||||| |||||| |||||||| ||||| || ||  |    
T  3743508 aaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaa 3743409  T
Q  823 aaaccttttttctgtcgaaagacgccaca 851  Q
    ||||| ||||| ||||||||||| |||||    
T  3743408 aaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 642 - 804
Target Start/End: Original strand, 4173452 - 4173615
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 741  Q
    ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4173452 aaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 4173551  T
Q  742 cacctttatttttaatgca-ttgtattttacctttcctttacgtttctgcaatttaaacttaat 804  Q
     |  ||||| ||||||||| ||| ||||    ||| ||||| ||||||||||||||||||||||    
T  4173552 tagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 384 - 477
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  384 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 477  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 396 - 537
Target Start/End: Complemental strand, 20146371 - 20146231
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 495  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  496 caaagagatgttggacttagcattgaaaagtctcgaagcctt 537  Q
    ||| ||||||||||| |||||| | |||||||| ||||||||    
T  20146271 caacgagatgttggagttagca-taaaaagtcttgaagcctt 20146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 541
Target Start/End: Original strand, 14986744 - 14986882
Alignment:
Q  399 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 497  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  498 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 541  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  14986839 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 14986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 541
Target Start/End: Original strand, 15416355 - 15416493
Alignment:
Q  399 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 497  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  498 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 541  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  15416450 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 15416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 4173104 - 4173222
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| ||| |||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagag-ttc 4173202  T
Q  497 aaagagatgttggacttagc 516  Q
     | |||||||||||| ||||    
T  4173203 gacgagatgttggacctagc 4173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 649 - 753
Target Start/End: Original strand, 10649240 - 10649344
Alignment:
Q  649 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccacctt 747  Q
    |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| ||||||||||||||||||  |||||  | |||||||||    
T  10649240 gtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaactgattttccaaaccacctt 10649338  T
Q  748 tatttt 753  Q
    ||||||    
T  10649339 tatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 668 - 800
Target Start/End: Complemental strand, 18046501 - 18046371
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 766  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  767 tttacctttcctttacgtttctgcaatttaaact 800  Q
    ||||||||| ||||| |||| |||  ||||||||    
T  18046404 tttaccttttctttaagtttttgcgttttaaact 18046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  395 tttgttagctggtattttcaccagcctcatttaatgt 431  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 1e-92; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 545 - 851
Target Start/End: Complemental strand, 28371341 - 28371034
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-a 642  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||| ||| | |||| ||||| ||||  ||||||||||||  |    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccataggga 28371243  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    ||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  28371242 aaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacc 28371143  T
Q  743 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 842  Q
     ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  28371142 tcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaa 28371043  T
Q  843 gacgccaca 851  Q
    |||||||||    
T  28371042 gacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 630 - 846
Target Start/End: Complemental strand, 9218298 - 9218079
Alignment:
Q  630 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 728  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| ||||||||||||||    
T  9218298 gttttccatagggaaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaa 9218201  T
Q  729 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc- 827  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||||||||||| |     
T  9218200 tgatttgtcgaaccatctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacc 9218101  T
Q  828 ---ttttttctgtcgaaagacg 846  Q
       |||||||||||||||||||    
T  9218100 tttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 285 - 541
Target Start/End: Complemental strand, 28371705 - 28371450
Alignment:
Q  285 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 384  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattttt 28371606  T
Q  385 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 484  Q
    ||| || ||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371605 tggtgg-caatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  485 caaaggagtttcaaagagatgttggacttagcattgaaaagtctcgaagccttaaag 541  Q
     ||||||||||  | |||||||||||||||||||  |||||||| ||||||||||||    
T  28371506 taaaggagttttgacgagatgttggacttagcatgaaaaagtctggaagccttaaag 28371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 396 - 514
Target Start/End: Original strand, 23539981 - 23540099
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 495  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  496 caaagagatgttggactta 514  Q
    | | |||||||||||||||    
T  23540081 cgacgagatgttggactta 23540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 629 - 760
Target Start/End: Original strand, 23540219 - 23540351
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||||||||||||||    
T  23540219 agttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaa 23540318  T
Q  728 aggatttgtcgaaccacctttatttttaatgca 760  Q
    | ||||| |||||||||||||||||||||||||    
T  23540319 aagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 722 - 848
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  722 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 821  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||  || ||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  822 aaaaccttttttctgtcgaaagacgcc 848  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 629 - 801
Target Start/End: Original strand, 9286326 - 9286498
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| | |||||||||||    
T  9286326 agttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaa 9286424  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    |||||||||||||| |||||||||||||||||| || | |||| ||||  |||| ||||||||| ||| |||||    
T  9286425 aggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 629 - 763
Target Start/End: Complemental strand, 16600725 - 16600591
Alignment:
Q  629 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| | |||||| ||||    
T  16600725 agttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaa 16600627  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattg 763  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16600626 aggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 567 - 729
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  567 atggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaatcacctata 665  Q
    ||||||| |||| |||| |||||||| |||||||||||  ||  | ||| ||||| |||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttccag-ttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  666 caaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 729  Q
    || ||||||||||  | |||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 648 - 790
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  648 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 747  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  748 tatttttaatgcattgtattttacctttcctttacgtttctgc 790  Q
    ||||||||||||| || | |||| |||| ||||| ||||||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 399 - 477
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  399 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 477  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 713 - 760
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  713 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 760  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 650 - 790
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  650 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 749  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  750 tttttaatgcattgtattttacctttcctttacgtttctgc 790  Q
    ||||||||||| |||| |||| |||| ||| | ||||||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 22713661 - 22713767
Alignment:
Q  695 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 794  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| ||||| |||||| || ||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtttctacactt 22713760  T
Q  795 taaactt 801  Q
    | |||||    
T  22713761 ttaactt 22713767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 629 - 693
Target Start/End: Original strand, 24577344 - 24577408
Alignment:
Q  629 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 693  Q
    |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577344 agtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 300 - 477
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  300 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 396  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 477  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 651 - 786
Target Start/End: Complemental strand, 25095187 - 25095052
Alignment:
Q  651 cgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaaccaccttta 749  Q
    |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| ||| |  |||||||| |||  |||||||||||||||||||    
T  25095187 cgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccaccttta 25095089  T
Q  750 tttttaatgcattgtattttacctttcctttacgttt 786  Q
    || | |||||| || | |||| |||| ||||| ||||    
T  25095088 ttataaatgcaatgcaatttatcttttctttaagttt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 629 - 801
Target Start/End: Original strand, 27123582 - 27123752
Alignment:
Q  629 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| | |||||||||||    
T  27123582 agttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttatacataatgtatgtaa 27123678  T
Q  728 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
       ||||| |||||||||||||| |||||||||| || | |||| | |||||||| |||| |||  |||||||||    
T  27123679 tctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 740 - 786
Target Start/End: Complemental strand, 9006976 - 9006930
Alignment:
Q  740 accacctttatttttaatgcattgtattttacctttcctttacgttt 786  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagttt 9006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 9e-91; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 545 - 853
Target Start/End: Complemental strand, 18929543 - 18929235
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| | ||| || || ||||  ||||||||| ||  ||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaa 18929444  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||||    
T  18929443 aatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaacca 18929344  T
Q  744 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 843  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||     
T  18929343 cctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaat 18929245  T
Q  844 acgccacagg 853  Q
    ||||||||||    
T  18929244 acgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 559 - 851
Target Start/End: Complemental strand, 26651133 - 26650839
Alignment:
Q  559 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaat 657  Q
    ||||||||||||||  |||||| || |||||||| ||||||||| |  |   | ||| ||||| ||||||||||||||||||  ||||| ||||||||||    
T  26651133 ttgtctacatggaatgagtgctaatcgtgggattggtttctttctagttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaat 26651034  T
Q  658 cacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaat 757  Q
    |||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651033 cacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataat 26650934  T
Q  758 gcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 851  Q
     ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650933 ccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 304 - 541
Target Start/End: Complemental strand, 18929887 - 18929651
Alignment:
Q  304 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 403  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  404 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 503  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |  |||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttcgacaaga 18929689  T
Q  504 tgttggacttagcattgaaaagtctcgaagccttaaag 541  Q
    | |||||||||||||  |||||||||||| ||||||||    
T  18929688 ttttggacttagcatgaaaaagtctcgaatccttaaag 18929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 642 - 845
Target Start/End: Complemental strand, 17402932 - 17402729
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 741  Q
    ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  |||    
T  17402932 aaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataac 17402833  T
Q  742 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 841  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  17402832 cacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaa 17402733  T
Q  842 agac 845  Q
    ||||    
T  17402732 agac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 617 - 832
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  617 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 715  Q
    ||||| ||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  716 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 815  Q
     |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||  |||||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  816 gcttttaaaaccttttt 832  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 642 - 801
Target Start/End: Original strand, 31404046 - 31404205
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaa 740  Q
    |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  31404046 aaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaa 31404144  T
Q  741 ccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||||||||  |||||||||| || | ||||||||| ||||| ||||||||| |||||||||    
T  31404145 ccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 300 - 480
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  300 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 399  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  400 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 480  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 26651400 - 26651281
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  497 aaagagatgttggacttagc 516  Q
    || || ||||||||||||||    
T  26651300 aacgatatgttggacttagc 26651281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 545 - 680
Target Start/End: Complemental strand, 19879117 - 19878981
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aaa 643  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| |||||||||||| ||| | ||| ||||  ||||  |||||||||||| |||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaa 19879018  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaaca 680  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19879017 aacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 545 - 801
Target Start/End: Complemental strand, 24544126 - 24543870
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 642  Q
    ||||||||||||| | || |||||||||| ||||||||| ||||  || | || ||||||  ||| | | || ||||| ||||  |||||||||||| ||    
T  24544126 tgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttccag-ttattttactatgtataaatagtagttttccataggaa 24544028  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    ||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||||||||| | |||||    
T  24544027 aaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaacc 24543929  T
Q  743 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    |||||||||||||||||| || | ||||  ||||||  | |||| |||||||| |||||    
T  24543928 acctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 642 - 768
Target Start/End: Original strand, 20478255 - 20478379
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 740  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  741 ccacctttatttttaatgcattgtattt 768  Q
    ||||||||| |||||||| |||| ||||    
T  20478352 ccacctttaattttaatgaattgcattt 20478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  332 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 431  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  432 ggtcaacattggttgattttt 452  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 640 - 753
Target Start/End: Original strand, 29891263 - 29891376
Alignment:
Q  640 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta-aaggatttgtcg 738  Q
    ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| | |||||||||| |  ||| |||||    
T  29891263 gaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttatacaaaatgtatgtacactgatatgtcg 29891361  T
Q  739 aaccacctttatttt 753  Q
    |||||| ||||||||    
T  29891362 aaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 28760672 - 28760724
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  28760672 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 786
Target Start/End: Original strand, 17162015 - 17162101
Alignment:
Q  700 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 786  Q
    |||||||| ||||| |||||||||||||   |||||||||| ||||||||| | |||||||| || | ||||||||||||||| ||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccaccttta-tattaatgcaatgcaatttacctttcctttaagttt 17162101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 801
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  700 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaa 798  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||| ||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  799 ctt 801  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 558 - 825
Target Start/End: Original strand, 19217911 - 19218177
Alignment:
Q  558 tttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaa 656  Q
    |||||||||||| ||| ||||||| | |||||||| |||||||||||  ||| | | | ||||| |||||  |||||||||||  |||||||||||||||    
T  19217911 tttgtctacatgaaaggagtgctggtcgtgggattagtttctttccag-ttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaa 19218009  T
Q  657 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 756  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19218010 tcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 19218108  T
Q  757 tgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa 825  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  19218109 tgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 553 - 811
Target Start/End: Original strand, 20064388 - 20064653
Alignment:
Q  553 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtc 651  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||||||  ||| |  || ||||| ||||| ||||||||||||  ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtc 20064486  T
Q  652 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 751  Q
    ||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  20064487 gcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatt 20064586  T
Q  752 tttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 811  Q
    |||||||||       || ||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20064587 tttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 545 - 811
Target Start/End: Complemental strand, 20061075 - 20060802
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 644  Q
    ||||||||||||| |||| |||||| ||  |||| |||| |||||||| ||||||||| || ||| |  || ||||| ||| | ||||||||||||   |    
T  20061075 tgggagacaagcgattgtgtacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggta 20060977  T
Q  645 -acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
     |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  20060976 gacgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaacca 20060877  T
Q  744 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 811  Q
    |||||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20060876 cctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 545 - 760
Target Start/End: Complemental strand, 20713443 - 20713228
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| || ||| |  || ||||| ||||| ||||||||||||  ||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaa 20713345  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    ||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||||||||  ||||||| |||| |    
T  20713344 aacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaa 20713245  T
Q  744 cctttatttttaatgca 760  Q
    |||||||||||||||||    
T  20713244 cctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 544 - 760
Target Start/End: Original strand, 23210024 - 23210240
Alignment:
Q  544 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-a 642  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||| ||||| ||||||  |    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccataggga 23210122  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    |||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  23210123 aaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaacc 23210222  T
Q  743 acctttatttttaatgca 760  Q
    || |||||||||||||||    
T  23210223 acttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 545 - 811
Target Start/End: Original strand, 20058550 - 20058824
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 643  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||||||| |||| ||| | | ||| |  || ||||| ||| | ||||||||||| |  |    
T  20058550 tgggagacaagcggttgtttgcatggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggta 20058649  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
     || ||| ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||    
T  20058650 gacaggttgcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaacca 20058749  T
Q  744 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 811  Q
    |||||||||||||||||       |||||||||   |||  |||| |||||||||||||||||||||||| ||||    
T  20058750 cctttatttttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 327 - 534
Target Start/End: Original strand, 20064063 - 20064265
Alignment:
Q  327 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 426  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  427 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagt 526  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| | |||||||||||| ||||  | ||||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaaaagt 20064257  T
Q  527 ctcgaagc 534  Q
    ||||||||    
T  20064258 ctcgaagc 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 547 - 760
Target Start/End: Complemental strand, 25951528 - 25951315
Alignment:
Q  547 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaa 645  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| |||||||| | | ||| |  |  ||||| ||||| ||||||||||||  ||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaa 25951429  T
Q  646 cgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacc 745  Q
    | ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||      
T  25951428 caggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaat 25951330  T
Q  746 tttatttttaatgca 760  Q
    |||| | ||||||||    
T  25951329 tttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 396 - 516
Target Start/End: Complemental strand, 25951783 - 25951664
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  ||||||||||| ||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggag-tt 25951685  T
Q  496 caaagagatgttggacttagc 516  Q
    ||| || |||||||| |||||    
T  25951684 caacgaaatgttggatttagc 25951664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 20058300 - 20058418
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttc 20058398  T
Q  497 aaagagatgttggacttagc 516  Q
     | |||||||||||| ||||    
T  20058399 gacgagatgttggacctagc 20058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 494  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 394 - 516
Target Start/End: Original strand, 23209772 - 23209893
Alignment:
Q  394 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 493  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||     
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggag- 23209870  T
Q  494 ttcaaagagatgttggacttagc 516  Q
    ||| | ||||||||||| |||||    
T  23209871 ttcgacgagatgttggatttagc 23209893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 629 - 729
Target Start/End: Original strand, 23379373 - 23379474
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  23379373 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 23379472  T
Q  728 ag 729  Q
    ||    
T  23379473 ag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 642 - 801
Target Start/End: Original strand, 17167275 - 17167433
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 741  Q
    |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17167275 aaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaac 17167373  T
Q  742 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||||||||||||||||| | || | |||| |||| ||||| |||||| || ||| |||||    
T  17167374 cacctttatttttaatgtaatgcaatttatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 19924022 - 19924128
Alignment:
Q  695 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 794  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||| |||| |||| ||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactt 19924121  T
Q  795 taaactt 801  Q
    | |||||    
T  19924122 ttaactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 653 - 849
Target Start/End: Complemental strand, 23355777 - 23355581
Alignment:
Q  653 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttattt 752  Q
    ||||| ||||||||| ||||||| |||| |  ||||||||| |  || ||||| ||||||| | ||| |||||||| ||||| ||  |||||||||| ||    
T  23355777 caaattacctatacagaattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttactt 23355678  T
Q  753 ttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 849  Q
    |||||||| || | |||| |||| ||||| ||||||||||||| ||||| || |||| ||||||| |||||||| ||||| |  ||||| |||||||    
T  23355677 ttaatgcaatgcaatttatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaacgtttttcccatcgaatgacgcca 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 668 - 801
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 767  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  768 ttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||| |||| ||||| ||||||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 397 - 516
Target Start/End: Complemental strand, 20061323 - 20061207
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| | |||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaaggtg-ttc 20061227  T
Q  497 aaagagatgttggacttagc 516  Q
     | |||||||||||||||||    
T  20061226 gacgagatgttggacttagc 20061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 19926749 - 19926855
Alignment:
Q  695 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 794  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||| |||| |||| ||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttatgcactt 19926848  T
Q  795 taaactt 801  Q
    | |||||    
T  19926849 ttaactt 19926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 647 - 780
Target Start/End: Complemental strand, 17987619 - 17987487
Alignment:
Q  647 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 744  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  745 ctttatttttaatgcattgtattttacctttccttt 780  Q
    |||||||||||||||| || ||||||||||||||||    
T  17987522 ctttatttttaatgcaatgcattttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 441  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 443 - 516
Target Start/End: Complemental strand, 20713647 - 20713575
Alignment:
Q  443 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagc 516  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggag-ttcgacgagatattggacttagc 20713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  370 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 469  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  470 agtcttttc 478  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  366 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 441  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 476
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  366 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 463  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  464 aattgaagtcttt 476  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 849
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  818 ttttaaaaccttttttctgtcgaaagacgcca 849  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 749
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  700 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 749  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 3e-78; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 545 - 851
Target Start/End: Complemental strand, 15687166 - 15686859
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaa-a 643  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| |||||||||||  ||| | ||| ||||| ||||||||||||||||||   |    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttccag-ttattttctatgtataaataagagttttccatagtgga 15687068  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    |||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| ||||||||||||| || |||||| | | |||    
T  15687067 aacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggacc 15686968  T
Q  743 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 842  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  15686967 acctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaa 15686868  T
Q  843 gacgccaca 851  Q
     ||||||||    
T  15686867 cacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 617 - 844
Target Start/End: Original strand, 24699049 - 24699275
Alignment:
Q  617 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 715  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||    
T  24699049 tgtataaataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aa 24699146  T
Q  716 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 815  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  24699147 gaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttacttt 24699246  T
Q  816 gcttttaaaaccttttttctgtcgaaaga 844  Q
    |||| | ||||| ||||||||||||||||    
T  24699247 gcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 629 - 845
Target Start/End: Complemental strand, 26011055 - 26010836
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  26011055 agttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa---tttaaacttaatgccttaactttgcttttaaa 824  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  26010955 atgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaa 26010856  T
Q  825 accttttttctgtcgaaagac 845  Q
    | |  ||||||||||||||||    
T  26010855 aac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 649 - 832
Target Start/End: Original strand, 13428733 - 13428914
Alignment:
Q  649 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttt 748  Q
    ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  13428733 gtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacattt 13428830  T
Q  749 atttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttt 832  Q
    ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13428831 attattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 299 - 477
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  299 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 396  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 477  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 544 - 849
Target Start/End: Original strand, 4765605 - 4765916
Alignment:
Q  544 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aa 642  Q
    |||||||||||||  ||||||||||||||| ||||  ||| |||||||| ||   | | | | ||| | ||| ||||| ||||  |||||||||||| ||    
T  4765605 atgggagacaagcagttgtctacatggaagaagtgtagatcgtgggatt-gtacttgttctagttattttctatgtataaatagtagttttccataggaa 4765703  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtatgtaaaggatttgtcg 738  Q
    ||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||||||| |||||||||    
T  4765704 aaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcg 4765803  T
Q  739 aaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctg 836  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||||||||| ||||||||||| |||||| ||||  ||    
T  4765804 aaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttcatg 4765903  T
Q  837 tcgaaagacgcca 849  Q
    |||||||||||||    
T  4765904 tcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 629 - 824
Target Start/End: Complemental strand, 4769937 - 4769742
Alignment:
Q  629 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 728  Q
    ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || ||||||||||||||||||||||||||||||     
T  4769937 agttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaac 4769838  T
Q  729 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaa 824  Q
    | |||| ||||||||||||||||| |||||||||||||||   |||||||||| |||| || ||||||||||||||||||| ||||||||||||||    
T  4769837 gaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 545 - 760
Target Start/End: Complemental strand, 7149005 - 7148790
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 644  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||||||||| |||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaa 7148907  T
Q  645 ac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148906 accgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 7148807  T
Q  744 cctttatttttaatgca 760  Q
    | |||| ||||||||||    
T  7148806 cttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 629 - 851
Target Start/End: Original strand, 4832516 - 4832740
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| ||||||| ||| |||    
T  4832516 agttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaa 4832615  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-c 826  Q
    ||||| ||  | ||||||||||| |||||||||||||||||||  ||||||||  |||| |||||||||||||||||| ||| || ||||||| |||| |    
T  4832616 aggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacc 4832715  T
Q  827 cttttttctgtcgaaagacgccaca 851  Q
    ||||||||| |||||||||| ||||    
T  4832716 cttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 545 - 768
Target Start/End: Original strand, 9033398 - 9033622
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccatagaaa 643  Q
    ||||| ||||||| ||||||||||||| | |||| |||| ||| |||| |||||||||||  ||| | |||| ||||| ||||| |||||||||||| ||    
T  9033398 tgggatacaagcggttgtctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaa 9033495  T
Q  644 aacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    ||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| ||||||||||||||||||||||||| ||||    
T  9033496 aacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaacc 9033595  T
Q  743 acctttatttttaatgca-ttgtattt 768  Q
    |||||||||||||||||| ||||||||    
T  9033596 acctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 545 - 757
Target Start/End: Original strand, 29614512 - 29614724
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||  ||| |  || ||||| || || ||||||||||||  ||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaa 29614609  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    || |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29614610 aatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaacc 29614709  T
Q  743 acctttatttttaat 757  Q
    |||||||||||||||    
T  29614710 acctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 329 - 518
Target Start/End: Original strand, 4765286 - 4765475
Alignment:
Q  329 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 428  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  429 tgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgttggacttagcat 518  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||| ||||||   |||||||||| | || ||||||||||||||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttccttcaacttaaggagtttcgacgaaatgttggacttagcat 4765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 653 - 795
Target Start/End: Complemental strand, 23378631 - 23378488
Alignment:
Q  653 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttg-tcgaaccacctttatt 751  Q
    |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||    
T  23378631 caaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatt 23378532  T
Q  752 tttaatgcattgtattttacctttcctttacgtttctgcaattt 795  Q
    ||||||||| || | |||| |||||||||| |||||| ||||||    
T  23378531 tttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 300 - 513
Target Start/End: Complemental strand, 4770307 - 4770096
Alignment:
Q  300 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 399  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  400 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 499  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||   ||||| |||  |     
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaacataaggaattttgac 4770110  T
Q  500 gagatgttggactt 513  Q
    ||||||||||||||    
T  4770109 gagatgttggactt 4770096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 629 - 760
Target Start/End: Original strand, 16242937 - 16243069
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   |||||||||||||||||||||||||||||||||    
T  16242937 agttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaa 16243036  T
Q  728 aggatttgtcgaaccacctttatttttaatgca 760  Q
    || |||||||||||||| |||||||||||||||    
T  16243037 agcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 398 - 516
Target Start/End: Original strand, 24698727 - 24698845
Alignment:
Q  398 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 497  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  498 aagagatgttggacttagc 516  Q
    | |||||||| ||||||||    
T  24698827 acgagatgttagacttagc 24698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 397 - 477
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 477  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 399 - 492
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  399 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 492  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 397 - 515
Target Start/End: Original strand, 29614037 - 29614155
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagttt 495  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | |||||| ||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggag-tt 29614135  T
Q  496 caaagagatgttggacttag 515  Q
    | | ||||||| ||||||||    
T  29614136 cgacgagatgtaggacttag 29614155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 668 - 791
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 767  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  768 ttacctttcctttacgtttctgca 791  Q
    |||  ||| ||||| |||||||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 518
Target Start/End: Original strand, 4832190 - 4832300
Alignment:
Q  410 tttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgtt 507  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||  |||| |||||||| |||||||||| ||| ||    ||||||||  | ||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttttcttgaacttgaggagttttgacgagatgtt 4832289  T
Q  508 ggacttagcat 518  Q
    |||||||||||    
T  4832290 ggacttagcat 4832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 717 - 791
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  717 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 791  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 717 - 791
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  717 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 791  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 740 - 786
Target Start/End: Complemental strand, 13409879 - 13409833
Alignment:
Q  740 accacctttatttttaatgcattgtattttacctttcctttacgttt 786  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagttt 13409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 480
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 480  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 7e-76; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 623 - 851
Target Start/End: Original strand, 22397548 - 22397777
Alignment:
Q  623 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatg 720  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| ||||||||||||||    
T  22397548 aataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatg 22397647  T
Q  721 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttacgtttctgcaatttaaacttaatgccttaactttgctt 819  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    ||||| |||    
T  22397648 tatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agacttttctt 22397745  T
Q  820 ttaaaaccttttttctgtcgaaagacgccaca 851  Q
    |||||||||||||| |||||||||||||||||    
T  22397746 ttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 545 - 760
Target Start/End: Complemental strand, 16177519 - 16177304
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 643  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||| ||||| ||||  ||||||||||| | ||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc-acttattttctatgtataaatattagttttccatatggaa 16177421  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16177420 aacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaacca 16177321  T
Q  744 cctttatttttaatgca 760  Q
    | |||||||||||||||    
T  16177320 catttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 300 - 513
Target Start/End: Complemental strand, 17525444 - 17525233
Alignment:
Q  300 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 399  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  400 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 499  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  500 gagatgttggactt 513  Q
    |||||||| |||||    
T  17525246 gagatgttagactt 17525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 544 - 756
Target Start/End: Complemental strand, 15830238 - 15830026
Alignment:
Q  544 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaa 642  Q
    ||||||||||| |  ||||||||||||||  |||||| ||| ||||||| |||||||||||  ||| | ||| ||||| ||||| |||||| |||| | |    
T  15830238 atgggagacaaacagttgtctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataagga 15830140  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| |    
T  15830139 aaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatc 15830040  T
Q  743 acctttatttttaa 756  Q
    || |||||||||||    
T  15830039 acttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 642 - 842
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 741  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  742 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 839  Q
     |||||||||||||||||||| || ||||  ||| ||||| |||||| ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  840 aaa 842  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 629 - 760
Target Start/End: Original strand, 1177214 - 1177349
Alignment:
Q  629 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga----atgtatg 724  Q
    |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | |||||||||||||||||||||||    |||||||    
T  1177214 agttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatg 1177313  T
Q  725 taaaggatttgtcgaaccacctttatttttaatgca 760  Q
    ||||||||||||||||||||||||||||||||||||    
T  1177314 taaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 330 - 458
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  330 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 429  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  430 gtggtcaacattggttgatttttactctt 458  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 668 - 801
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 767  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  768 ttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||| | || ||||| ||||||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 668 - 801
Target Start/End: Original strand, 17947890 - 17948023
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 767  Q
    |||||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || | |    
T  17947890 aaattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaat 17947989  T
Q  768 ttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||| |||||||||| |||| |||| ||| |||||    
T  17947990 ttatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 696 - 801
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  696 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 795  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  796 aaactt 801  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 303 - 477
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  303 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 402  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  403 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 477  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 545 - 811
Target Start/End: Original strand, 31126065 - 31126351
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| |||||||||||  ||| |  || ||||| ||||| |||||||| |||  ||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaa 31126163  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa------------agaatgtatgtaaagga 731  Q
    |||||||| |||||| ||||||   |||||||||||| || ||||| |   || |||||||||||||||||            | |||||||||||||||    
T  31126164 aacgggtctcaaatctcctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaagga 31126263  T
Q  732 tttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaattt-aaacttaatgccttaa 811  Q
    |||| |||||||||||||||| |||||||       |||||||||  |||| ||||  ||||||||||||| ||||||||||| ||||    
T  31126264 tttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  397 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 481  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 1176918 - 1176994
Alignment:
Q  438 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttag 515  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggag-ttcaacgagatgttggatttag 1176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 698 - 799
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 796  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||| ||||||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  797 aac 799  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 698 - 749
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 408 - 494
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  408 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 494  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 786
Target Start/End: Complemental strand, 25945916 - 25945846
Alignment:
Q  716 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 786  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| ||||||| ||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagttt 25945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 700 - 749
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  700 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 749  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 742
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 742  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 4e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 617 - 851
Target Start/End: Complemental strand, 11361830 - 11361595
Alignment:
Q  617 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 715  Q
    ||||| |||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||||||| || |  |||||  ||||| ||||||||| | |||    
T  11361830 tgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaacactcgacttaccgacgcgagggaaaagagttacaaa 11361731  T
Q  716 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  11361730 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcatttaaatttctgcaatttaaacttaatgcctttacttt 11361631  T
Q  816 gcttttaaaaccttttttctgtcgaaagacgccaca 851  Q
    ||||||||||| ||||| ||||| |||||| |||||    
T  11361630 gcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 643 - 844
Target Start/End: Original strand, 9409168 - 9409370
Alignment:
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    |||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9409168 aaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacc 9409267  T
Q  743 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaa 841  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| |    
T  9409268 acctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgta 9409367  T
Q  842 aga 844  Q
    |||    
T  9409368 aga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 396 - 539
Target Start/End: Complemental strand, 11362160 - 11362017
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 495  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  496 caaagagatgttggacttagcattgaaaagtctcgaagccttaa 539  Q
    ||| |||||||||||||||||||  |||| ||||||||||||||    
T  11362060 caacgagatgttggacttagcatgaaaaattctcgaagccttaa 11362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 629 - 801
Target Start/End: Complemental strand, 16675259 - 16675086
Alignment:
Q  629 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  16675259 agttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaa 16675161  T
Q  728 ag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    |  ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||||||||| |||||||||    
T  16675160 aatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 698 - 760
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 760  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 801
Target Start/End: Complemental strand, 4697626 - 4697454
Alignment:
Q  629 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| | |||||||||||    
T  4697626 agttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttatacaaaatgtatgtaa 4697528  T
Q  728 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
       |||| |||||||||||||||  ||||||||| |  | ||||||||| ||||| |||| |||  |||||||||    
T  4697527 tctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtttatgcgttttaaactt 4697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 786
Target Start/End: Original strand, 18558469 - 18558516
Alignment:
Q  739 aaccacctttatttttaatgcattgtattttacctttcctttacgttt 786  Q
    |||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagttt 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 748  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 363 - 441
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  363 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 441  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 1e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 545 - 806
Target Start/End: Complemental strand, 20146437 - 20146169
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 643  Q
    ||||||||||| | |||||||||| |||| |||| |||| |||||| | |||||||||||| ||| |  |||||||| ||||||||||||||||| | ||    
T  20146437 tgggagacaagtgattgtctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaa 20146338  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  20146337 aatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggacca 20146239  T
Q  744 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgc 806  Q
     ||||||||||||||||       || |||||| ||||| ||||| ||||||||||||||||||||||||    
T  20146238 tctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 545 - 825
Target Start/End: Original strand, 11013745 - 11014027
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    | ||||||  |   | ||| |||||  ||| |||||||||||||  ||    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggattgtactttttccagttatttttctatgtatatataggagttttccataggtaa 11013844  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11013845 aatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagcca 11013944  T
Q  744 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgcttttaaaa 825  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  11013945 cctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 545 - 795
Target Start/End: Complemental strand, 33103273 - 33103021
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-- 641  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    | ||||||  ||| | |  | ||||| ||||  ||||||||||||       
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgctttttccag-ttattttggtatgtataaatagtagttttccatagggg 33103175  T
Q  642 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 741  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  742 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 795  Q
     || ||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 400 - 537
Target Start/End: Complemental strand, 20146686 - 20146549
Alignment:
Q  400 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 499  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  500 gagatgttggacttagcattgaaaagtctcgaagcctt 537  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20146586 gagatgttggacttagcattgaaaagtctcgaagcctt 20146549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 11013493 - 11013614
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  497 aaagagatgttggacttagcat 518  Q
     | |||||||||||||||||||    
T  11013593 gacgagatgttggacttagcat 11013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 629 - 801
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  629 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||| ||||||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 630 - 757
Target Start/End: Original strand, 20150435 - 20150563
Alignment:
Q  630 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 728  Q
    |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| | |||| ||| |||    
T  20150435 gttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaa 20150534  T
Q  729 ggatttgtcgaaccacctttatttttaat 757  Q
    ||||||||| |||||||||||||||||||    
T  20150535 ggatttgtcaaaccacctttatttttaat 20150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  285 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 384  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  385 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 478  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 631 - 781
Target Start/End: Original strand, 22607834 - 22607984
Alignment:
Q  631 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 729  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  730 gatttgtcgaaccacctttatttttaatgcattgtattttacctttccttta 781  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttccttta 22607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 545 - 757
Target Start/End: Original strand, 13201980 - 13202192
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 642  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||  || |  | ||||||  ||| | | || ||||| ||||  |||||| ||||| ||    
T  13201980 tgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggctttttccag-ttattttgctatgtataaatagtagtttttcataggaa 13202078  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    ||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  13202079 aaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaacc 13202177  T
Q  743 acctttatttttaat 757  Q
    |||||||||||||||    
T  13202178 acctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 629 - 787
Target Start/End: Complemental strand, 17615430 - 17615272
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | |||||||||||    
T  17615430 agttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaa 17615332  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttc 787  Q
    |||||||||||||| ||||||||||| |||||| || | || |||||| ||||| |||||    
T  17615331 aggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtttc 17615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 668 - 758
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  668 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 758  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 729 - 801
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  729 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||| ||||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 617 - 680
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  617 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 680  Q
    ||||| ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 740 - 779
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  740 accacctttatttttaatgcattgtattttacctttcctt 779  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 749
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  699 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 749  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 396 - 478
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  396 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 478  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 3e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 545 - 806
Target Start/End: Original strand, 5582 - 5851
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 643  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| |||||| ||| |  |||||||| ||||||||||||| ||||  ||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaa 5681  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    ||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  5682 aacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggacca 5781  T
Q  744 cctttatttttaatgca-ttg------tattttacctttcctttacgtttctgcaatttaaacttaatgc 806  Q
    ||||||||||||||||| |||      |||||| ||||| ||||| |||| |||||||||||||||||||    
T  5782 cctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 404 - 537
Target Start/End: Original strand, 5337 - 5470
Alignment:
Q  404 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 503  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||  ||| | |||| | ||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgaga 5436  T
Q  504 tgttggacttagcattgaaaagtctcgaagcctt 537  Q
    |||||||||||||||  |||||||||||||||||    
T  5437 tgttggacttagcatcaaaaagtctcgaagcctt 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 545 - 851
Target Start/End: Complemental strand, 21097 - 20793
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaa- 643  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||  ||| ||||||||  |     
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggac 20999  T
Q  644 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 743  Q
    || |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  20998 aatgggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaacca 20900  T
Q  744 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 843  Q
    |||||||||| ||||||||| |||||  |||||||||| ||||||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||    
T  20899 cctttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaag 20801  T
Q  844 acgccaca 851  Q
    ||||||||    
T  20800 acgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 518
Target Start/End: Complemental strand, 21337 - 21225
Alignment:
Q  407 tattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtttcaaagagatg 505  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| | ||||| |||| ||||   |||||||||| | || ||||||| | ||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  506 ttggacttagcat 518  Q
    ||||||| |||||    
T  21237 ttggactaagcat 21225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 545 - 801
Target Start/End: Original strand, 374041 - 374294
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaaattagtat-ctttgtattaataagagttttccatagaa 642  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||  | || ||||  | ||| | | || ||||| ||||  ||||||||||||      
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagattttgcttttttc--agttattttgctatgtataaatagtagttttccataggg 374138  T
Q  643 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 742  Q
    |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  374139 aaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaagtatttgtcgaacc 374236  T
Q  743 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    |||||||||||||||||| || | |||| |||||||||| |||| |||||||| |||||    
T  374237 acctttatttttaatgcaatgcaatttatctttccttta-gtttttgcaattttaactt 374294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 300 - 453
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  300 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 399  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  400 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 453  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 629 - 801
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  728 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 801  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||| ||||||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 686 - 801
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  686 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtt 785  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || ||||| |||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  786 tctgcaatttaaactt 801  Q
    |||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 397 - 541
Target Start/End: Original strand, 5725 - 5869
Alignment:
Q  397 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 496  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  497 aaagagatgttggacttagcattgaaaagtctcgaagccttaaag 541  Q
    || |||||||| ||||||||||  ||||| || |||||| |||||    
T  5825 aacgagatgttagacttagcatgaaaaagccttgaagccctaaag 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 545 - 605
Target Start/End: Original strand, 5971 - 6031
Alignment:
Q  545 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaa 605  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttccaa 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 629 - 729
Target Start/End: Complemental strand, 13092 - 12991
Alignment:
Q  629 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 727  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  13092 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 12993  T
Q  728 ag 729  Q
    ||    
T  12992 ag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 516
Target Start/End: Complemental strand, 5388 - 5276
Alignment:
Q  404 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 502  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  503 atgttggacttagc 516  Q
    ||||||||||||||    
T  5289 atgttggacttagc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 617 - 770
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  617 tgtattaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 715  Q
    ||||| ||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  716 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 770  Q
     ||||||||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 753
Target Start/End: Original strand, 871 - 996
Alignment:
Q  629 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-a 726  Q
    ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| | ||||||||| |    
T  871 agttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaa 969  T
Q  727 aaggatttgtcgaaccacctttatttt 753  Q
    || ||||||| |||| |||||||||||    
T  970 aatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 801
Target Start/End: Original strand, 26930 - 27031
Alignment:
Q  698 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 796  Q
    |||||||||||||||| | |||||||||||    |||||||||||||||||||  ||||||||| || | |||| |||| ||||| ||||||||  ||||    
T  26930 agagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta--tttaatgcaatgcaatttatcttttcttta-gtttctgcgtttta 27026  T
Q  797 aactt 801  Q
    |||||    
T  27027 aactt 27031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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