View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_40 (Length: 211)
Name: NF12051_low_40
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 1358830 - 1358648
Alignment:
| Q |
12 |
agcagagagtgattaaatactcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatac |
111 |
Q |
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| T |
1358830 |
agcagagagtgattaaatactcaaacttagtaaacttcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatac |
1358731 |
T |
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| Q |
112 |
ggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1358730 |
ggacaaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1358648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 1350920 - 1350742
Alignment:
| Q |
16 |
gagagtgattaaatactcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggac |
115 |
Q |
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| T |
1350920 |
gagagtgatttaacactcaaatttagtagaccgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggac |
1350821 |
T |
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| Q |
116 |
aaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1350820 |
aaaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1350742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 1374377 - 1374200
Alignment:
| Q |
17 |
agagtgattaaatactcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggaca |
116 |
Q |
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| T |
1374377 |
agagtgatttaacactcaaatttagtaaacttcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggaca |
1374278 |
T |
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| Q |
117 |
aaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1374277 |
aaggcattagggtaagcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1374200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 31 - 194
Target Start/End: Complemental strand, 1390664 - 1390501
Alignment:
| Q |
31 |
ctcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggacaaaggcattagggta |
130 |
Q |
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| T |
1390664 |
ctcaaatttagtaaacatcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggta |
1390565 |
T |
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| Q |
131 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1390564 |
agcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1390501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 1384541 - 1384396
Alignment:
| Q |
49 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggacaaaggcattagggtaagcaacaacaacttcatc |
148 |
Q |
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| T |
1384541 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccgatgatacggacaaaggcattagggtaagcaacaacaacttcatc |
1384442 |
T |
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| Q |
149 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1384441 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1384396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 49 - 194
Target Start/End: Complemental strand, 1394892 - 1394747
Alignment:
| Q |
49 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggacaaaggcattagggtaagcaacaacaacttcatc |
148 |
Q |
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| T |
1394892 |
caggtgtgtgtgcaatgaaactgatgcattgaacttgacgaactttgtcgaatccgatgatacggacaaaggcattagggtaagcatcaacaacttcatc |
1394793 |
T |
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| Q |
149 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
1394792 |
aagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
1394747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 7010553 - 7010391
Alignment:
| Q |
32 |
tcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggacaaaggcattagggtaa |
131 |
Q |
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| T |
7010553 |
tcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaa |
7010454 |
T |
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| Q |
132 |
gcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
7010453 |
gcagctttagcttcagcaagctccttcaacacttgagaagaatcagtggctccaaacaaaggc |
7010391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 194
Target Start/End: Complemental strand, 7007475 - 7007313
Alignment:
| Q |
32 |
tcaaatttagtagactgcaggtgtgtgtgcaatgaaactgatgcattgaacttgacgaacgttgtcgaatccaatgatacggacaaaggcattagggtaa |
131 |
Q |
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| T |
7007475 |
tcaaacttagtaggttgctggtgtgtgagcaatgaaactaatgcactgcacttgacgaacattgtcaaatccaatgattctgatgaatgattctgggtaa |
7007376 |
T |
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| Q |
132 |
gcaacaacaacttcatcaagctccttcaacacttgagaagcatcagttgctccaaacaaaggc |
194 |
Q |
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| T |
7007375 |
gcagctttagcttcagcaagctccttcaacacttgagaagaatcggtggctccgaacaaaggc |
7007313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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