View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12051_low_7 (Length: 673)
Name: NF12051_low_7
Description: NF12051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12051_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 537; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 34 - 611
Target Start/End: Complemental strand, 42616345 - 42615768
Alignment:
| Q |
34 |
ttttggtgggttcggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatattcgaagatcatcatattttgatattgagcattannnnn |
133 |
Q |
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| T |
42616345 |
ttttggtgggtttggcatgttgtgttttggaagtgatatataatacaagaaagtgagtatatttgaagatcatcatattttgatattgagcattattttt |
42616246 |
T |
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| Q |
134 |
nnagtatttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagtgaggtttgacaaaatgacaatgagatagttgttaaaggtag |
233 |
Q |
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| T |
42616245 |
ttagtatttgggtccttctaattgattcctgatgatagcaacatagattagaatcaagcgaggtttgacaaaatgacaatgagatagttgttaaagttag |
42616146 |
T |
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| Q |
234 |
tataggggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgatgcatagtagca |
333 |
Q |
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| T |
42616145 |
tataggggaaagaagggtaggcttcatgtgtggccaaagggactttttgaatgaggaaaagtgcaagaagtaaagtccaaattaatgatgcatagtagca |
42616046 |
T |
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| Q |
334 |
attggaagggagtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttaggccactatttgcatatgaggatatggtacatcta |
433 |
Q |
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| T |
42616045 |
attggaagggagtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttaggccactatttgcatatgaggatatggtacatcta |
42615946 |
T |
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| Q |
434 |
tgtttggtcttgttggtatgttacttcttttttgtttatgtaagttttcaaccattgaatgtgttgttttcgtttatcgggtgttaattcgatgataaga |
533 |
Q |
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| T |
42615945 |
tgtttggtcttgttggtatgttacttcttttttgtttatgtaagttttcaactattgaatgtgttgttttcgtttatcgggtgttaattcgatgataaga |
42615846 |
T |
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| Q |
534 |
gtttgatattaaaacttcaagcagccgagttcaaatttcatctagaatagttgtcagtatcactttaattaataataa |
611 |
Q |
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| T |
42615845 |
gtttgatattaaaacttcaagcagccgagttcaaatttcatctagaatagttgtcagtatcactttaattaataataa |
42615768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 10208553 - 10208608
Alignment:
| Q |
344 |
agtattttggagaataaatggttaggtaattgcttatctgtgcttgtcaattttag |
399 |
Q |
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| T |
10208553 |
agtattttggagaataaatggttaggtaattgcttatacgtgcatgtcaattttag |
10208608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42615949 - 42615912
Alignment:
| Q |
1 |
tctatgtttggtcttgttggtacgttacttcttttttg |
38 |
Q |
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| T |
42615949 |
tctatgtttggtcttgttggtatgttacttcttttttg |
42615912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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