View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12052_high_1 (Length: 1288)
Name: NF12052_high_1
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1094; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1094; E-Value: 0
Query Start/End: Original strand, 18 - 1171
Target Start/End: Complemental strand, 881103 - 879950
Alignment:
| Q |
18 |
aaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
881103 |
aaaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtactttcaacaactcattagtgctgttgatttttgc |
881004 |
T |
|
| Q |
118 |
catagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
881003 |
catagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgc |
880904 |
T |
|
| Q |
218 |
cagaacaacgccgagaggatgggatgcttttaactccgtgtggaacccctgcttacgtggcacctgaggttttgaagaagaaaggttacgatggttccaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
880903 |
cagaacaacgccgagaggatgggatgcttttaactccatgtggaacccctgcttacgtggcacctgaggttttgaagaagaaaggttacgatggttctaa |
880804 |
T |
|
| Q |
318 |
agctgacttatggtcttgtggggtaattctctatgctttactttgtggatatcttccttttcaaggtgagaatgttatgagaatttatagaaagactttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880803 |
agctgacttatggtcttgtggggtaattctctatgctttactttgtggatatcttccttttcaaggtgagaatgttatgagaatttatagaaagactttt |
880704 |
T |
|
| Q |
418 |
aaaggcgaatatgagtttcctgaatggatttctccacatgctaagatattgatttcgaatcttcttgttcctgatcctaaaaagaggtattcaattgttg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880703 |
aaaggcgaatatgagtttcctgaatggatttctccacatgctaagatgttgatttcgaatcttcttgttcctgatcctaaaaagaggtattcaattgttg |
880604 |
T |
|
| Q |
518 |
atattatgaatgatccttggtttcgagttgggtttgttaggcccattgcattttcaatgagggatttgagtattgaagaaaacaacaaagatatcaatat |
617 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
880603 |
atattatgaatcatccttggtttcgagttgggtttgttagacccattgcattttcaatgaaggatttgagtattgaagacaacaacaaagatatcaatat |
880504 |
T |
|
| Q |
618 |
tgatttcaatgagattggtgaagatgatgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcg |
717 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880503 |
tgatttcagtgagattggtgaagatgatgttgatattcctgaattggtaatggtgaaaccgtctcgtcctttttataatgcattcgagataatttcatcg |
880404 |
T |
|
| Q |
718 |
ttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaac |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880403 |
ttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagttttcggcttcaacaatgttggagaaac |
880304 |
T |
|
| Q |
818 |
ttgaggtgatggcgaagaagttaaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaagggaggggagaaagggaaaggtcgc |
917 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
880303 |
ttgaggtgatggggaagaagttaaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaagggaggggagaaagggaaaggtagc |
880204 |
T |
|
| Q |
918 |
gatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattggagtatgttaagatgtgtgaggaa |
1017 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
880203 |
gatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattggagtatgttaagatgtgtgaggaa |
880104 |
T |
|
| Q |
1018 |
caattgagaccttcactcaaagatattgtttggagttggcaaggtgacaatcataatgataataatcttcaatagtaacaattagtatagtttgaaagtt |
1117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
880103 |
caattgagaccttcactcaaagatattgtttggagttggcaaggtgacaatcataatgataataatcctcaatagtaacaattagtatagtttgaaagtt |
880004 |
T |
|
| Q |
1118 |
gtttgtctatgtagtcgacaattcgataaatgtctgatcttaatcgaataattc |
1171 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
880003 |
ggttgtctatgtagtcgacaattcgataatcgtctgatcttaatcgaataattc |
879950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 1174 - 1280
Target Start/End: Complemental strand, 879973 - 879866
Alignment:
| Q |
1174 |
cgtctgatcttaattgaataattcaaatttctaataannnnnnn-atatttgatgtatccaacttaaagtatgagctatcctatcattagtagttggtac |
1272 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
879973 |
cgtctgatcttaatcgaataattcaaatttctaataattttttttatatttgatgtatccaagtacaagtatgagctatcctatcattagtagttggtac |
879874 |
T |
|
| Q |
1273 |
cctttgct |
1280 |
Q |
| |
|
|||||||| |
|
|
| T |
879873 |
cctttgct |
879866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 9995110 - 9995043
Alignment:
| Q |
136 |
catcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttgg |
203 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||| | | | |||||||| |||||||| |
|
|
| T |
9995110 |
catcgtgatttgaaaccagaaaatcttctgttggatgaaaacggaaatttgaaggtctcagattttgg |
9995043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 45268596 - 45268038
Alignment:
| Q |
19 |
aaaggaggtgaactcttcaacaaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgcc |
118 |
Q |
| |
|
|||||||||||||| ||| ||| || || ||||| ||| || | ||| || |||| |||||||||||||||||| | || |||||||| ||||| || | |
|
|
| T |
45268596 |
aaaggaggtgaacttttcgccaaagtcgccaaaggtaaaatggaagaaaatattgccagaaagtattttcaacaattgatcagtgctgtagatttctgtc |
45268497 |
T |
|
| Q |
119 |
atagtcgtggtgtcacacatcgcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgcc |
218 |
Q |
| |
|
||||||| || || ||||| || ||| | ||||| || ||||| || ||||||||||| ||||| || ||||| || |||||||| | ||||| || || |
|
|
| T |
45268496 |
atagtcggggagttacacaccgtgatcttaaacccgagaatcttcttttggatgaaaatgaagatcttaaggtatctgattttggtttatcagcattacc |
45268397 |
T |
|
| Q |
219 |
agaacaacgccgagaggatgggatgcttttaactccgtgtggaacccctgcttacgtggcacctgaggttttgaagaagaaaggttacgatggttccaaa |
318 |
Q |
| |
|
|| ||||| || ||||| |||||| | || || ||||| || |||||||| || |||||||| ||||||||||||| ||||| ||||| || ||| |
|
|
| T |
45268396 |
tgatcaacgtagatccgatggaatgcttctcacaccttgtgggactcctgcttatgttgcacctgaagttttgaagaagattggttatgatggatcaaaa |
45268297 |
T |
|
| Q |
319 |
gctgacttatggtcttgtggggtaattctctatgctttactttgtggatatcttccttttcaaggtgagaatgttatgagaatttatagaaagactttta |
418 |
Q |
| |
|
||||| | ||||||||||| || ||||| | |||||| |||||||||||| | || ||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
45268296 |
gctgatatttggtcttgtggtgttattctttttgctttgctttgtggatatttgccctttcaaggtgagaatgttatgaggatttatagcaaatctttta |
45268197 |
T |
|
| Q |
419 |
aaggcgaatatgagtttcctgaatggatttctccacatgctaagatattgatttcgaatcttcttgttcctgatcctaaaaagaggtattcaattgttga |
518 |
Q |
| |
|
||| || |||| || || ||||||||||| || |||||||| ||||||||| ||| | |||||| ||||||| ||||||||| ||||||| ||| |
|
|
| T |
45268196 |
aagctgattatgttttaccagaatggatttcaccgggtgctaagaaattgatttctaatttgcttgttgttgatcctgaaaagaggttttcaattcctga |
45268097 |
T |
|
| Q |
519 |
tattatgaatgatccttggtttcgagttgggtttgttaggcccattgcattttcaatga |
577 |
Q |
| |
|
||||||||| ||||||||||||| | |||| ||| | || || ||||| |||||||||| |
|
|
| T |
45268096 |
tattatgaaagatccttggtttcaaattggatttatgagacctattgctttttcaatga |
45268038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 694 - 1064
Target Start/End: Complemental strand, 45267918 - 45267548
Alignment:
| Q |
694 |
aatgcattcgagataatttcatcgttgtcacatggttttgatcttaggagtttatttgagacgaggaagaggttgccatcgatgtttatatcaaagtttt |
793 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| |||||||| |||| ||| ||||||||||||||||| | ||| |||||||||||||| ||||| | |
|
|
| T |
45267918 |
aatgcatttgagataatttcatctttatcacatggatttgatctaaggaatttgtttgagacgaggaagagatcgccttcgatgtttatatccaagttgt |
45267819 |
T |
|
| Q |
794 |
cggcttcaacaatgttggagaaacttgaggtgatggcgaagaagttaaatttgaagataacagggaagaaggagtttgtcgtgagaatggagggcgcaag |
893 |
Q |
| |
|
| ||||| | || ||| ||| || ||| ||||||||||| | ||||||| | |||| ||||||||||| || | ||||||||| |||| ||| |
|
|
| T |
45267818 |
ctgcttctgcggtggtggggaagctggagaatgtggcgaagaagcttaatttgagggtaacggggaagaaggatttcatggtgagaatgcaggggacaac |
45267719 |
T |
|
| Q |
894 |
ggaggggagaaagggaaaggtcgcgatgacaatggaggtatttgaggtggcgccggaggtggcagtggttgagttttctaagtgtggtggagacacattg |
993 |
Q |
| |
|
|||||||| ||||| || | | ||||| ||||||| |||||||| || ||||||||||||||||| ||||||||||||| | |||||||||| | |
|
|
| T |
45267718 |
agaggggaggaaggggaaattgggtatgacggtggaggtgtttgaggtcgcaccggaggtggcagtggtagagttttctaagtcagctggagacacactt |
45267619 |
T |
|
| Q |
994 |
gagtatgttaagatgtgtgaggaacaattgagaccttcactcaaagatattgtttggagttggcaaggtga |
1064 |
Q |
| |
|
|||||||| ||| | ||||| || || | |||||||| |||||||| ||||| ||||| ||||| ||||| |
|
|
| T |
45267618 |
gagtatgtaaagttctgtgaagatgaagttagaccttctctcaaagacattgtgtggagctggcagggtga |
45267548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 224
Target Start/End: Complemental strand, 3294244 - 3294060
Alignment:
| Q |
40 |
aaggtagcaaaaggaaaattgaatgaagatgttgctagaaagtattttcaacaactcattagtgctgttgatttttgccatagtcgtggtgtcacacatc |
139 |
Q |
| |
|
|||||||||||||| ||||| || ||||| |||| |||||||| || ||||| || || |||||||| |||| |||||||||| | ||||| | |||| |
|
|
| T |
3294244 |
aaggtagcaaaaggtaaatttaaggaagaacttgcaagaaagtacttccaacagcttataagtgctgtagattattgccatagtagaggtgtttctcatc |
3294145 |
T |
|
| Q |
140 |
gcgatttgaaaccagaaaatctactcttggatgaaaacgaagacctcaaggtctccgattttggactctcagcgttgccagaaca |
224 |
Q |
| |
|
| ||||| ||||| || ||| || | | ||||||||||| | || || |||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
3294144 |
gtgatttaaaaccggagaatttattactcgatgaaaacgagaatcttaaagtctccgattttggtctctctgctttgcctgaaca |
3294060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 27312300 - 27312268
Alignment:
| Q |
256 |
tgtggaacccctgcttacgtggcacctgaggtt |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27312300 |
tgtggaacccctgcttacgtggcacctgaggtt |
27312268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University