View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12052_high_13 (Length: 262)

Name: NF12052_high_13
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12052_high_13
NF12052_high_13
[»] chr1 (4 HSPs)
chr1 (1-245)||(47053496-47053741)
chr1 (3-146)||(47063476-47063620)
chr1 (3-97)||(47061837-47061931)
chr1 (52-136)||(47038755-47038839)
[»] chr7 (6 HSPs)
chr7 (187-236)||(45557459-45557508)
chr7 (171-236)||(17111939-17112005)
chr7 (186-223)||(1442678-1442715)
chr7 (179-236)||(33853418-33853475)
chr7 (186-226)||(40491682-40491722)
chr7 (205-245)||(40728729-40728769)
[»] chr5 (1 HSPs)
chr5 (22-98)||(848815-848891)
[»] chr4 (2 HSPs)
chr4 (187-236)||(33843805-33843854)
chr4 (183-220)||(38716698-38716735)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47053741 - 47053496
Alignment:
Q  1 ccagaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcactgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053741 ccagaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcactgg 47053642  T
Q  101 aaattatccaattttgaaattgttaactaacacaattaaataaataacagtacaaatcacgagtgttgctagaattgatttt-agtaaattgattctgac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47053641 aaattatccaattttgaaattgttaactaacacaattaaataaataacagtacaaatcacgagtgttgctagaattgattttgagtaaattgattctgac 47053542  T
Q  200 taatagtgagttggaggtaaagtgattggtgtttggaatttggata 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47053541 taatagtgagttggaggtaaagtgattggtgtttggaatttggata 47053496  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 47063620 - 47063476
Alignment:
Q  3 agaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagcc-atgtaatactgtgactcacagctgatttctcactgga 101  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||||||||||  ||    
T  47063620 agaaactgcataggctgtggttccatcaaggtgagctttcttggcagatatagggtgaagccaatgtaataccgtgactaacatctgatttctcacaaga 47063521  T
Q  102 aattatccaattttgaaattgttaactaacacaattaaataaata 146  Q
     || || ||||| |||||| ||| ||||||||||| ||| |||||    
T  47063520 gatgattcaattatgaaatagtttactaacacaataaaacaaata 47063476  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 47061931 - 47061837
Alignment:
Q  3 agaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcac 97  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||  | |||| ||||||| | |||||||||||||    
T  47061931 agaaactgcataggctgtggttccattaatatgaactttcttggcatctatagggtgaagccaatttatacagtgactcgcggctgatttctcac 47061837  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 136
Target Start/End: Complemental strand, 47038839 - 47038755
Alignment:
Q  52 atagggtgaagccatgtaatactgtgactcacagctgatttctcactggaaattatccaattttgaaattgttaactaacacaat 136  Q
    |||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||||||   |||| |||||||||||||||    
T  47038839 atagggtgaagccaagtaatactgtaactaactgctgatttctgactggaaattatccaattactaaatagttaactaacacaat 47038755  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 45557508 - 45557459
Alignment:
Q  187 aattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 236  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttgga 45557459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 17112005 - 17111939
Alignment:
Q  171 agaattgatttt-agtaaattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 236  Q
    |||||||||||| ||| |||||||| ||||||| | ||| ||| ||||||||||||| |||||||||    
T  17112005 agaattgattttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttgga 17111939  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 1442715 - 1442678
Alignment:
Q  186 aaattgattctgactaatagtgagttggaggtaaagtg 223  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  1442715 aaattgattctgactaaaagtgagttgcaggtaaagtg 1442678  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 33853418 - 33853475
Alignment:
Q  179 ttttagtaaattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 236  Q
    ||||||| ||||||||||| |||| ||||||||| || ||||||||||  ||||||||    
T  33853418 ttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttgga 33853475  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 40491722 - 40491682
Alignment:
Q  186 aaattgattctgactaatagtgagttggaggtaaagtgatt 226  Q
    ||||||||| ||||||| ||||||||| |||||||||||||    
T  40491722 aaattgattttgactaaaagtgagttgaaggtaaagtgatt 40491682  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 40728769 - 40728729
Alignment:
Q  205 gtgagttggaggtaaagtgattggtgtttggaatttggata 245  Q
    |||||||| |||||||||||||  |||||||||||||||||    
T  40728769 gtgagttgaaggtaaagtgatttatgtttggaatttggata 40728729  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 848815 - 848891
Alignment:
Q  22 gttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcact 98  Q
    ||||||| ||| |||||||  ||||||| |||||| ||||||||||| || |||||||| || ||||||||||||||    
T  848815 gttccatgaatatgaacttgtttggcagatataggatgaagccatgtgatgctgtgactaactgctgatttctcact 848891  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 33843854 - 33843805
Alignment:
Q  187 aattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 236  Q
    ||||||||||| |||| ||||||||||| |||||||||||  ||||||||    
T  33843854 aattgattctggctaaaagtgagttggatgtaaagtgatttatgtttgga 33843805  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 38716735 - 38716698
Alignment:
Q  183 agtaaattgattctgactaatagtgagttggaggtaaa 220  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  38716735 agtaaattgattctgactaagagtgagttgcaggtaaa 38716698  T

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