View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_high_15 (Length: 225)
Name: NF12052_high_15
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 13893389 - 13893567
Alignment:
| Q |
18 |
ttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagattgaaatcgttaccatgttaagattgttgagaatc |
117 |
Q |
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| T |
13893389 |
ttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagattgaaatcgttaccat---------------aatc |
13893473 |
T |
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| Q |
118 |
accatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgttgtgaagaagaaattcatgaatg |
211 |
Q |
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| T |
13893474 |
accctgttggttctaaactttctttgacacttttcgtgaagcatagattgaaagttaaccttcatagatgttgtgaagaagaaattcatgaatg |
13893567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 13893378 - 13893459
Alignment:
| Q |
89 |
tcgttaccatgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaa |
170 |
Q |
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| T |
13893378 |
tcgttaccgtgttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagattgaaa |
13893459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 13888898 - 13889015
Alignment:
| Q |
89 |
tcgttaccatgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgt |
188 |
Q |
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| T |
13888898 |
tcgttaccatgttaaggttgttgagaatcaccttattgttcctaagctttctttgacactttacatgaaacatggattaaaagttaatcttcataggcgt |
13888997 |
T |
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| Q |
189 |
tgtgaagaagaaattcat |
206 |
Q |
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| T |
13888998 |
tgtgatgaagaaattcat |
13889015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 13891807 - 13891924
Alignment:
| Q |
89 |
tcgttaccatgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgt |
188 |
Q |
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| T |
13891807 |
tcgttaccatgttaaggttgttgagaagcaccctgttgttcctaagctttctttgacactttacatgaaacatggattgaaagttaatcttcatcgacgt |
13891906 |
T |
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| Q |
189 |
tgtgaagaagaaattcat |
206 |
Q |
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| T |
13891907 |
tgtgatgaaaaaattcat |
13891924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 93 - 206
Target Start/End: Complemental strand, 13895802 - 13895689
Alignment:
| Q |
93 |
taccatgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgttgtg |
192 |
Q |
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| T |
13895802 |
taccatattaaggttgttgaaaatcaccttgttgttcctaagcttgctttgacactttacatgaagcatggattaaaagttaaccttcataggcgttgtg |
13895703 |
T |
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| Q |
193 |
aagaagaaattcat |
206 |
Q |
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| T |
13895702 |
atgaagaaattcat |
13895689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 13891818 - 13891888
Alignment:
| Q |
18 |
ttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagattgaaa |
88 |
Q |
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| T |
13891818 |
ttaaggttgttgagaagcaccctgttgttcctaagctttctttgacactttacatgaaacatggattgaaa |
13891888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 13890629 - 13890519
Alignment:
| Q |
96 |
catgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgttgtgaag |
195 |
Q |
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| T |
13890629 |
catgttaaggttgttgaaaatcaccttgttgttcctaagcttactttgacattttacataaagtatggattaaaagttaaccttcataggcgttgtgatg |
13890530 |
T |
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| Q |
196 |
aagaaattcat |
206 |
Q |
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| T |
13890529 |
aagaaactcat |
13890519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13895796 - 13895729
Alignment:
| Q |
17 |
attaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagatt |
84 |
Q |
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| T |
13895796 |
attaaggttgttgaaaatcaccttgttgttcctaagcttgctttgacactttacatgaagcatggatt |
13895729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 13888909 - 13888975
Alignment:
| Q |
18 |
ttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagatt |
84 |
Q |
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||||| ||||||||||||||| | ||| | |||||||||||||||||||||||||||| ||| |||| |
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| T |
13888909 |
ttaaggttgttgagaatcaccttattgttcctaagctttctttgacactttacatgaaacatggatt |
13888975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 91 - 206
Target Start/End: Complemental strand, 1033796 - 1033681
Alignment:
| Q |
91 |
gttaccatgttaagattgttgagaatcaccatgttggttctaaactttctttgacacttttcatgaagcatagattgaaagttaaccttcatagatgttg |
190 |
Q |
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| T |
1033796 |
gttaccatgttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggattaaaagttaaccttcataggcgttg |
1033697 |
T |
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| Q |
191 |
tgaagaagaaattcat |
206 |
Q |
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| T |
1033696 |
tgatgaagaaattcat |
1033681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 1033787 - 1033721
Alignment:
| Q |
18 |
ttaagattgttgagaatcaccctgttggttctaagctttctttgacactttacatgaagcatagatt |
84 |
Q |
| |
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||||| ||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||| |||| |
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| T |
1033787 |
ttaaggttgttgagaatcaccctattgttcctaagctatctttgacactttacatgaagcatggatt |
1033721 |
T |
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