View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12052_high_3 (Length: 528)
Name: NF12052_high_3
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_3 |
 | |
|
| [»] scaffold0160 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 220 - 506
Target Start/End: Original strand, 9545964 - 9546250
Alignment:
| Q |
220 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttcagtaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9545964 |
ccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagcaaattctctaaaacaaattggacattcatgaattttcttttcactaa |
9546063 |
T |
|
| Q |
320 |
cattgatannnnnnncaatgttaattttttcatgttgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctct |
419 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546064 |
cattgatatttttttcaatgttaattttttcatgatgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttcttgtgactcgctct |
9546163 |
T |
|
| Q |
420 |
gtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtaccttcttcaacggtttcag |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546164 |
gtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtaccttcttcaacggtttcag |
9546250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 9545764 - 9545930
Alignment:
| Q |
14 |
catcagaaacagcagaaccttcaacttgactaacatcgtcatcaccatcgtcttcatgttcatcttcatcttcatccatcggagcaggaaaatttagatc |
113 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9545764 |
catcggaaacagcagaaccttcaacttgactaacatcgtcatcaccattgtcttcatgttcatcttcatcttcgtccatcggagcaggaaaatttagatc |
9545863 |
T |
|
| Q |
114 |
taacaaactatctccaacattcgcggaaactcgagcaacctcgacgttccttctaaccattgttgtt |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9545864 |
taacaaactatctccaacattcgcggaaactcgagcaaccttgacgttccttctaaccattgttgtt |
9545930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 315
Target Start/End: Original strand, 19594 - 19675
Alignment:
| Q |
234 |
atgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttca |
315 |
Q |
| |
|
||||||||| | |||||||| ||||||||||| ||| |||| ||| |||||| | ||||||||||||| |||||||||| |
|
|
| T |
19594 |
atgtgttcttttgtgtccaccaagtgcttgacccgaattaaatactcgaaaacataccggacattcatgaactttcttttca |
19675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University