View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_high_4 (Length: 424)
Name: NF12052_high_4
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 6913487 - 6913779
Alignment:
| Q |
16 |
agatgagtttggatctgaatcaagtcttcaatatgatgg-----------aatttccttgcttatataactgttaatattagccatcggtgtctgagttg |
104 |
Q |
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| T |
6913487 |
agatgggtttggatctgaatcaagtcttcaatatgatggaatttcaatggaatttccttacttatataactgttaatattagccatcagtgtctgagttg |
6913586 |
T |
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| Q |
105 |
attgtttgacaaacaaagcgtgaacgtgagcaaacatccttgaatttggaatcataaatggatataaagaaaactttgtcagtagggaagtcttcaaact |
204 |
Q |
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| T |
6913587 |
attgtttgacaaacaaagcgtgaacgtgagcaaacatccttggatttggaatcataaatggatataaagaaaactttgtcagtagggaagtcttcaaact |
6913686 |
T |
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| Q |
205 |
tataaccctagaggttggaaacgagagatgttctagaaaataaaattatcaggaaa---gcatcattttccttacctaagtcaaaatcatcaaa |
295 |
Q |
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| T |
6913687 |
tataaccctagaggttggaaacgagagatgttctagaaaataaaattatcaggaaagatgaataattttccttacct-agtcaaaatcttcaaa |
6913779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 337 - 409
Target Start/End: Original strand, 6913776 - 6913848
Alignment:
| Q |
337 |
caaaaatattgtggaaaactgagttatgttacaaaaacatgattcatgagaaatgttgtattagtattttatc |
409 |
Q |
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| T |
6913776 |
caaaaatattgtggaaaactgagttattttacaaaaacatgattcatgagaaatgttgtattagtattttatc |
6913848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 39384676 - 39384587
Alignment:
| Q |
72 |
aactgttaatattagccatcggtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttgaatttggaatcataa |
161 |
Q |
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| T |
39384676 |
aactgttaaaattagccataagtgtctgagttgattgtttgacaaacaaagcgtgaacgtgagcaaacatccttggaattggaatcataa |
39384587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40601267 - 40601214
Alignment:
| Q |
16 |
agatgagtttggatctgaatcaagtcttcaatatgatggaatttccttgcttat |
69 |
Q |
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| T |
40601267 |
agatgagtttggatctaaatcaagtcttcaataagatggaatttccttgcttat |
40601214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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