View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12052_high_5 (Length: 374)
Name: NF12052_high_5
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 3763683 - 3763802
Alignment:
| Q |
194 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtgtggcgtggttgttggctcatgatcatggttgcgtcattttagtgactcacatgcat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3763683 |
tatatcatttggttccattcaatggctgaatcagaatgggtgtatggcgtggttgttggctcatgatcatggttgcgtcattttagtgactcacatgcat |
3763782 |
T |
|
| Q |
294 |
cattataaagaagtagagag |
313 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3763783 |
cattataaagaagtagagag |
3763802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3762976 - 3763114
Alignment:
| Q |
1 |
aacaaagtgaggaaatgtttggaagacattatttggtggaaattgtgaaattgtgatgctaactttgttatctgcttaatgaagtgaagcatatatagga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
3762976 |
aacaaagtgaggaaatgtttggaagacataatttggtggagtttgtgaaaatgtgatgctaactttgttatctgcttagtcaagtgaagcatatatagga |
3763075 |
T |
|
| Q |
101 |
ataggaatataaaatggagtggggtagggtcaattatta |
139 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
3763076 |
ataggaaaataaaatggagtgggatagggtcaattatta |
3763114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 305
Target Start/End: Original strand, 3775566 - 3775699
Alignment:
| Q |
172 |
tgagaaaaagcatatataggaata--tatcatttggttccat----tca-atggctgaatcagaatgggtgtgtggcgtggttgttggctcatgatcatg |
264 |
Q |
| |
|
||||||||| |||| ||||||| | |||||||||||||||| ||| ||||||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
3775566 |
tgagaaaaaacatagataggaaaacatatcatttggttccatggcatcacatggctgaatctgaataggtgtgtggcgtagttgttggctcatga----- |
3775660 |
T |
|
| Q |
265 |
gttgcgtcattttagtgactcacatgcatcattataaagaa |
305 |
Q |
| |
|
||||||||||| | |||||| ||||||||| ||||||||| |
|
|
| T |
3775661 |
-ttgcgtcatttcattgactcgcatgcatca-tataaagaa |
3775699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 3763523 - 3763563
Alignment:
| Q |
134 |
ttattatggatcaaaaatataaaaagagaactggtcattga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
3763523 |
ttattatggatcaaaaatataaaaagagaagtgatcattga |
3763563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3777048 - 3777077
Alignment:
| Q |
1 |
aacaaagtgaggaaatgtttggaagacatt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3777048 |
aacaaagtgaggaaatgtttggaagacatt |
3777077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University