View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_high_8 (Length: 331)
Name: NF12052_high_8
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 77 - 327
Target Start/End: Original strand, 47053922 - 47054173
Alignment:
| Q |
77 |
ataagttactttcaaatgcattagtagtacatattttactgtcttacagaatgtccttccttatgcaaattctttacaggaactccagctgattgcactt |
176 |
Q |
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| T |
47053922 |
ataagttactttcaaatgcattagtagtacatattttactgtcttactgaatgtccttccttatgcaaattcttaacaggaactccagctgattgcactt |
47054021 |
T |
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| Q |
177 |
ctctgggagtttccaaagcactctttcctacagttgctgatctggtatgacagcccttcccttgctcctgcagtttgagtttttagttttgttttgagta |
276 |
Q |
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| T |
47054022 |
ctctgggagtttccaaagcactctttcctacagttgctgatctggtatgacagccctctccttgctcctgcagttcgagtttttagttttgctttgagta |
47054121 |
T |
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| Q |
277 |
attatattgttggaatggactc-ttttcttttccttactctatctgcttctt |
327 |
Q |
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| T |
47054122 |
attatattgttggaatggactctttttcttttccttactctatctgcttctt |
47054173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 47062128 - 47062208
Alignment:
| Q |
249 |
gtttgagtttttagttttg--ttttgagtaattatattgttggaatggactcttttcttttccttactctatctgcttctt |
327 |
Q |
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| T |
47062128 |
gtttgagttttttgttttgcattttgagtaattacattgttggaatggactcttttcttttcctaactctgcctgcttctt |
47062208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47053846 - 47053881
Alignment:
| Q |
1 |
tgaatttctggcagatccctttcattaatttgtatt |
36 |
Q |
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| T |
47053846 |
tgaatttctggcagatccctttcattaatttgtatt |
47053881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 47063813 - 47063893
Alignment:
| Q |
249 |
gtttgagtttttagttttg--ttttgagtaattatattgttggaatggactcttttcttttccttactctatctgcttctt |
327 |
Q |
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|||||| ||||| |||||| ||||||||||||| ||||| ||||||||| || ||||||||| ||||| ||||||||| |
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| T |
47063813 |
gtttgatttttttgttttgcattttgagtaattacattgtcggaatggaccctactcttttcctaactctgcctgcttctt |
47063893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 47028259 - 47028303
Alignment:
| Q |
134 |
tccttatgcaaattctttacaggaactccagctgattgcacttct |
178 |
Q |
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| T |
47028259 |
tccttgtgcaaattatttacagggactccagctgattgaacttct |
47028303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 47062074 - 47062118
Alignment:
| Q |
181 |
gggagtttccaaagcactctttcctacagttgctgatctggtatg |
225 |
Q |
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| T |
47062074 |
gggaatttccaaagcactctttcctaccgtagctgatttggtatg |
47062118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 853016 - 852954
Alignment:
| Q |
146 |
ttctttacaggaactccagctgattgcacttctctgggagtttccaaagcactctttcctaca |
208 |
Q |
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| T |
853016 |
ttctttgcaggtactccagctgattgcacttctctcggaatttccagagcactatttcctaca |
852954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 848792 - 848742
Alignment:
| Q |
155 |
ggaactccagctgattgcacttctctgggagtttccaaagcactctttcct |
205 |
Q |
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| T |
848792 |
ggaactcccgctgattgtacttctctcggaatttccaaatcactctttcct |
848742 |
T |
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