View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_low_11 (Length: 286)
Name: NF12052_low_11
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_low_11 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 851 - 581
Alignment:
| Q |
13 |
atggacatcaacttgattaggttgatttaatggtattgattggagattttggaatgtacttctcttaaattatcatattcgattttttctgtatcaattt |
112 |
Q |
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| T |
851 |
atgggcatcaacttaattgggttgatttgatggtattgattggaaattttgaaatgtactcctcttaaattatcatattcgatttttcctgtatcaattt |
752 |
T |
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| Q |
113 |
tgatatcctataatgtggaccaattttgacctacattttttcacgctcataaaactagtctcctatattttaaattcagatttttggtctctccctcgta |
212 |
Q |
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| T |
751 |
cggtattctataatgtggatcaattttaacctacatttttccacgctcataaaaccagtctccaatcttttaaattcagatttttggtctttcc----ac |
656 |
T |
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| Q |
213 |
tttttaaatttaaaaagtggtgatgtgacaatttttctaatcaacgt-gatatgaaatccaatgacaaaatttgt |
286 |
Q |
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| T |
655 |
attttaaatttaaaaagtggtgatgtgacaatttttttaatcaacgtagacatgaaatccaatgacaaaatttgt |
581 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 18235290 - 18235366
Alignment:
| Q |
133 |
caattttgacctacattttttcacgctcataaaactagtctcctatattttaaattcagatttttggtctctccctc |
209 |
Q |
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| T |
18235290 |
caattttgacctacatttttgtgtactcataacactattctcctatcttttaaattcagatatttagtctttccctc |
18235366 |
T |
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