View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_low_2 (Length: 686)
Name: NF12052_low_2
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 676
Target Start/End: Complemental strand, 8453325 - 8452677
Alignment:
| Q |
18 |
acttcaatagccttccaactaggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttacaacatatggcacgaactat |
117 |
Q |
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| T |
8453325 |
acttcaatagccttccaactaggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttacaacatatggcacgaactat |
8453226 |
T |
|
| Q |
118 |
ttctagtacacctgcaattgaagtccgcctcctccaggtgatttatgcgaactttatggtgccgactaccaattatccaaatgatcatggcatcaatatc |
217 |
Q |
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| T |
8453225 |
ttctagtacacctgcaattgaagtccgcctcctccaggtgatttatgcgaactttatggtgccgactaccaattatccaaatgatcatggcatcaatatc |
8453126 |
T |
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| Q |
218 |
tttctttcatgcaggttcgttctacttctggtgtacatttgagcaaatcccttcattccaacttacaaaaagaaaccagtactgatattccaagcaacat |
317 |
Q |
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| T |
8453125 |
tttc----atgcaggttcgttctacttctggtgtacattcgagcaaatcctttcattccaacttacaaaaagaaaccattactgatattccaagcaacat |
8453030 |
T |
|
| Q |
318 |
gaggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatattatggatttat |
417 |
Q |
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| T |
8453029 |
gaggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatat---ggatttat |
8452933 |
T |
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| Q |
418 |
cagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatc |
517 |
Q |
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| T |
8452932 |
cagactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatc |
8452833 |
T |
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| Q |
518 |
ttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgctgtatttcctattgttcctta |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8452832 |
ttggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgttgtatttcctattgttcctta |
8452733 |
T |
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| Q |
618 |
gtttaca-ttttnnnnnnntgataatttaattaatatccccctcttcatccttgcctatg |
676 |
Q |
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| T |
8452732 |
gtttacatttttccccccctgataat----ttaatatccccctcttcatccttgcctatg |
8452677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 53664103 - 53664042
Alignment:
| Q |
37 |
taggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttac |
98 |
Q |
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|||||||||| |||| |||||||| |||| ||| || |||| ||||||||||||||||||| |
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| T |
53664103 |
taggtatgcattggatatgaatgtggagagggctcaatatgtccttatgcataaaaggttac |
53664042 |
T |
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