View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12052_low_6 (Length: 361)

Name: NF12052_low_6
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12052_low_6
NF12052_low_6
[»] chr1 (3 HSPs)
chr1 (65-274)||(23444893-23445102)
chr1 (273-352)||(23445138-23445218)
chr1 (19-57)||(23444863-23444901)
[»] chr7 (2 HSPs)
chr7 (203-262)||(6091036-6091096)
chr7 (104-142)||(8796805-8796843)
[»] chr4 (5 HSPs)
chr4 (275-327)||(40940050-40940102)
chr4 (104-140)||(40940293-40940329)
chr4 (204-274)||(21249172-21249243)
chr4 (204-274)||(21253549-21253620)
chr4 (104-142)||(47954170-47954208)
[»] chr5 (1 HSPs)
chr5 (104-142)||(33263575-33263613)
[»] chr3 (1 HSPs)
chr3 (104-138)||(38412422-38412456)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 65 - 274
Target Start/End: Original strand, 23444893 - 23445102
Alignment:
Q  65 gacacccgtaccacacgtgtcccaaaagaaacnnnnnnnctttgcttcgacatacttttacactccttagacacttctattgagtttaaagatggtcgaa 164  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23444893 gacacccataccacacgtgtcccaaaagaaactttttttctttgcttcgacatacttttacactccttagacacttctattgagtttaaagatggtcgaa 23444992  T
Q  165 gtatagtagatggatgaatcaggtgaaaattcgatagcatcatttttaacttttcagtatagttgatggatgaatcgagtgaaaattgtcatattttgtt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23444993 gtatagtagatggatgaatcaggtgaaaattcgatagcatcatttttaacttttcagtatagttgatggatgaatcgggtgaaaattgtcatattttgtt 23445092  T
Q  265 taagaacttt 274  Q
    ||||||||||    
T  23445093 taagaacttt 23445102  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 23445138 - 23445218
Alignment:
Q  273 ttatatatagtttagttcttaatttagatcttttatagatgatgttcata-ttttatttacatatgtgttggtgtcctatg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  23445138 ttatatatagtttagttcttaatttagatcttttatagatgatgttcgtatttttttttacatatgtgttggtgtcctatg 23445218  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 23444863 - 23444901
Alignment:
Q  19 acctcatgcattaagcatgttccggtgtcagacacccat 57  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23444863 acctcatgcattaagcgtgttccggtgtcagacacccat 23444901  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 6091096 - 6091036
Alignment:
Q  203 atcatttttaacttttcagtatagttgatggatgaatcgagtg-aaaattgtcatattttg 262  Q
    |||||||||||||||| |||||||| |||||||||||   ||| |||||||||||||||||    
T  6091096 atcatttttaactttttagtatagtagatggatgaatgaggtgaaaaattgtcatattttg 6091036  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 8796843 - 8796805
Alignment:
Q  104 ctttgcttcgacatacttttacactccttagacacttct 142  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  8796843 cttttcttcgacacacttttacactccttagacacttct 8796805  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 40940102 - 40940050
Alignment:
Q  275 atatatagtttagttcttaatttagatcttttatagatgatgttcatatttta 327  Q
    ||||||| ||||||||| |||||||| |||| |||||| ||||||||||||||    
T  40940102 atatatattttagttctcaatttagaactttcatagataatgttcatatttta 40940050  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 40940329 - 40940293
Alignment:
Q  104 ctttgcttcgacatacttttacactccttagacactt 140  Q
    ||||||||||||| |||||||||||||||||||||||    
T  40940329 ctttgcttcgacacacttttacactccttagacactt 40940293  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 21249172 - 21249243
Alignment:
Q  204 tcatttttaacttttcagtatagttgatggatgaatcgagtgaaaat-tgtcatattttgtttaagaacttt 274  Q
    ||||||||||||||||| |||||| |||||| |||||  |||||||| |  |||||||||||| ||||||||    
T  21249172 tcatttttaacttttcaatatagtagatggaagaatcatgtgaaaatataccatattttgttttagaacttt 21249243  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 21253549 - 21253620
Alignment:
Q  204 tcatttttaacttttcagtatagttgatggatgaatcgagtgaaaat-tgtcatattttgtttaagaacttt 274  Q
    ||||||||||||||||| |||||| |||||| |||||  |||||||| |  |||||||||||| ||||||||    
T  21253549 tcatttttaacttttcaatatagtagatggaagaatcatgtgaaaatataccatattttgttttagaacttt 21253620  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Original strand, 47954170 - 47954208
Alignment:
Q  104 ctttgcttcgacatacttttacactccttagacacttct 142  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  47954170 ctttgcttcgacacacttttacactccttagacaattct 47954208  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 33263613 - 33263575
Alignment:
Q  104 ctttgcttcgacatacttttacactccttagacacttct 142  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  33263613 ctttgcttcgacacacctttacactccttagacacttct 33263575  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 38412456 - 38412422
Alignment:
Q  104 ctttgcttcgacatacttttacactccttagacac 138  Q
    ||||||||||||| |||||||||||||||||||||    
T  38412456 ctttgcttcgacacacttttacactccttagacac 38412422  T

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