View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_low_7 (Length: 343)
Name: NF12052_low_7
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 35971538 - 35971347
Alignment:
| Q |
19 |
actagtccattgataatgttcttttcaatttgatcttttcctttacctccatggcaaggaattctccatttaacataagtttaaatattcggatcacatt |
118 |
Q |
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| T |
35971538 |
actagtccattgataatgttcttttcaattttatcttttcctttacctccatggcaaggaattctccatttaacataagtttaaatattcggatcacatt |
35971439 |
T |
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| Q |
119 |
tgtttttaaggttgaaagttatgtattttgtgtgtggcatga--gtacactacctaatttgtatcttttggtgtaggtgacaactacaagag |
208 |
Q |
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| T |
35971438 |
tgtttttaaggttgaaagttatgtattttgtgtgtggcatgagtgtacactacctaatctgtatctttcggtgtaggtgacaactacaagag |
35971347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 35971348 - 35971276
Alignment:
| Q |
261 |
agaaacagaacccctacatgcttgagcaaagccaaataaacatgtgacagaatgagacaagtcataccctttg |
333 |
Q |
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| T |
35971348 |
agaaacagaacccctacctacatgagcaaagccaaacaaacatgtgatagaaagagacaagtcaaatcctttg |
35971276 |
T |
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