View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12052_low_9 (Length: 326)
Name: NF12052_low_9
Description: NF12052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12052_low_9 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 1128 - 824
Alignment:
| Q |
21 |
tagaccagtcaaagagtgtatttgtcatatttgcacacaaatggaaaaggcaaataactaacataaaagtaaatttggcttgagccaaaaatactaaaag |
120 |
Q |
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| T |
1128 |
tagaccagtcaaagagtgtatttgtcatatttgcacacaaatggaaaaggcaaataactaacataaaagtaaatttggcttgagccaaaaatactaaaag |
1029 |
T |
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| Q |
121 |
aatccacatgctatgtgtacnnnnnnnnnnnnnnnnnngggtagacaaacaatttagatttttgaactacaatattgaattaatagtaaacacatcctta |
220 |
Q |
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| T |
1028 |
aatccacatgctatgtgtacttttattttatattttttgggtagacaaacaatttagatttttgaactacaatattgaattaatagtaaacacatcctta |
929 |
T |
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| Q |
221 |
aatatatcttttatccatcattttggtctcaagcatttttagataatcaaaatatgggtatcattagataatcaaaatatgggcatcaacttgattaggt |
320 |
Q |
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| T |
928 |
aatatatcttttatccatcattttggtctcaa-catttttagataatcaaaatatgggtatcattagataattaaaatatgggcatcaacttaattgggt |
830 |
T |
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| Q |
321 |
tgattt |
326 |
Q |
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| T |
829 |
tgattt |
824 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 6825884 - 6825969
Alignment:
| Q |
50 |
tttgcacacaaatggaaaaggcaaataactaacataaaagtaaatttggcttgagccaaaaatactaaaagaatccacatgctatgt |
136 |
Q |
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| T |
6825884 |
tttgcacacaaatggaaaaacaaaatagctaaca-aaaagtaaagttggcttgtgccacaattactaagagaacccacatgccatgt |
6825969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 6813892 - 6813976
Alignment:
| Q |
50 |
tttgcacacaaatggaaaaggcaaataactaacataaaagtaaa-tttggcttgagccaaaaatactaaaagaatccacatgctatgt |
136 |
Q |
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| T |
6813892 |
tttgcacacaaatggaaaaaccaaatagctaaca-aaaagtaaagtttggcttgtgccaagaatact--tagaacccacatgctatgt |
6813976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 18235068 - 18235141
Alignment:
| Q |
208 |
aaacacatccttaaatatatcttttatccatcattttg--gtctcaagcatttttagataatcaaaatatgggt |
279 |
Q |
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| T |
18235068 |
aaacacatccataaatatatcttttatcgatcattttgtcgtcaaaaatgtttttagataaccaaaatatgggt |
18235141 |
T |
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