View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12053_high_1 (Length: 571)
Name: NF12053_high_1
Description: NF12053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12053_high_1 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Complemental strand, 52581638 - 52581090
Alignment:
| Q |
17 |
catcaggttgataattgtctcaagcctgttacacttttgttttatctatcctggcttatatataccgttgtttactatgtttgcagatactatttgagct |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52581638 |
catccggttgataattgtctcaagcctgttacacttttgttttatctatcctggcttatatataccgttgtttactatgtttgcagatactatttgagct |
52581539 |
T |
|
| Q |
117 |
acaaggtcaaagggtggaaaatgcaccattgttaaatatctggttacatattccacaatagatttcataataaaatcttgtgattatatggtatcagaaa |
216 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
52581538 |
aaaaggtcaa-gggtggaaaatgcaccattgttaaatatctggttacatattccacaatagatttcatgataaaatcttgtgattatatggtatcggaaa |
52581440 |
T |
|
| Q |
217 |
gacatggcaatatctttgaacttacgaactgattggggaacgcataactgttgctgcttcaattcaaacttcagttagaggggatctctatctagcttct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52581439 |
gacatggcaatatctttgaacttacgaactgattggggaacgcataactgttgctgcttcaattcaaacttcagttagaggggatctctatctagcttct |
52581340 |
T |
|
| Q |
317 |
aggctttcattttttcaagtacaatgtaatgtaactgaacgacattatgtcatgagatccttgcaacttgcaagggtcagttaatttgaatgccatgctt |
416 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52581339 |
aggctttcattttttcaagt-ca---taatgtaactgaacgaaattatgtcatgagatccttgcaacttgcaagggtcagttaatttgaatgccatgctt |
52581244 |
T |
|
| Q |
417 |
tacatttcgtgttttcaatcatgtttcttttgagcattgtgtgagaatgtgccacagtttgatttacaaatggcttgtgcataggaaactcctacttcag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52581243 |
tacatttcgtgttttcaatcatgtttcttttgagcattgtgtgagaatgtgccacagtttgatttacaaatggcttgtgcataggaaactcctacttcag |
52581144 |
T |
|
| Q |
517 |
ggtgggtgcattttaaaaagaaaaagacaatagatgaaatactggttggcagcgt |
571 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52581143 |
ggt-ggtgcattttaaaaagaaaaagacaatagatgaaatactggttggcagcgt |
52581090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University