View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12053_high_2 (Length: 547)
Name: NF12053_high_2
Description: NF12053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12053_high_2 |
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| [»] scaffold0649 (3 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 329 - 531
Target Start/End: Original strand, 6219 - 6419
Alignment:
| Q |
329 |
tatttctttcttccgatattgaattatgcatttannnnnnnnctcgtgtttctgttctatttttgtgcgttgtaggtctacaacgcaacttcaagcacaa |
428 |
Q |
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| T |
6219 |
tatttctttcttccgatattgaattatgcatttatttttt--ctcgtgtttctgttctatttttgtgcgttgtaggtctacaacccaacttcaagcacaa |
6316 |
T |
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| Q |
429 |
gagttgtggctggtacatgatggaataatgggaagaaaggatgaaagcgttattggagcttcaatttcttcatttatagcacaaacatttatattcttga |
528 |
Q |
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| T |
6317 |
gcattgtgtatggtacatgatggaataatgggaagaaaggatgaaagcgttattggagcttcaatttcttcatttatagcacaaacatttatattcttga |
6416 |
T |
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| Q |
529 |
tgt |
531 |
Q |
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||| |
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| T |
6417 |
tgt |
6419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 5838 - 6027
Alignment:
| Q |
19 |
aatgatattctgttggctactgttaacagtttggcaatctctgaaatgaataaacttttgtttttcttatatttgttataactatgaagatgaaattgtt |
118 |
Q |
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| T |
5838 |
aatgatattctgttggctactattaacagtttggcgatctctgaaatgaataaacttttgtttttcttatatttattataactatgaagatgaaattgtt |
5937 |
T |
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| Q |
119 |
caaggtacattattcactcccttttggaaattcgttaccgggttggtctacaaacgtattnnnnnnntcgaagcatgaaaagtacattat |
208 |
Q |
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| T |
5938 |
caaggtacattattccctcccttttggaaattcgttaccgggttggtctacaaacgtattaaaaaaaccgaagcatgaaaagtacattat |
6027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 207 - 333
Target Start/End: Original strand, 6074 - 6199
Alignment:
| Q |
207 |
atccataatgattcatgaagtgagaattactttatttctacaccaattcttggatattgttgtttttctgatattgtcatagaatctatgtaaacacaac |
306 |
Q |
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| T |
6074 |
atccataatgattcatgaagtgagaattactttatttctacaccaattcttggatattgttgttcttctgatattgccatagaatctatgtaaacacaac |
6173 |
T |
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| Q |
307 |
tcttggtacatgtataggactgtattt |
333 |
Q |
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| T |
6174 |
tcttggtacatgtata-gactgtattt |
6199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 20968346 - 20968400
Alignment:
| Q |
207 |
atccataatgattcatgaagtgagaattactttatttctacaccaattcttggat |
261 |
Q |
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| T |
20968346 |
atccatgatgattcatgaagtgagaattactttatttctacaccagttcttggat |
20968400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 20968671 - 20968752
Alignment:
| Q |
445 |
atgatggaataatgggaagaaaggatgaaagcgttattggagcttcaatttcttcatttatagcacaaacatttatattctt |
526 |
Q |
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| T |
20968671 |
atgatggaatgattggaagaaaggaagatcgagtcactagagctgcaatatcttcatttatagcacaaacaattatgttctt |
20968752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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