View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12053_low_5 (Length: 438)
Name: NF12053_low_5
Description: NF12053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12053_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 41984214 - 41984362
Alignment:
| Q |
15 |
atgaagaaataattggtcatgttgggagaaattgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaa |
114 |
Q |
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| T |
41984214 |
atgaagaaataattggtcatgttgggagaaagtgttttttaatttgctatccttactaagtacagaatagtgaaatcaacattagtgaaggccttgttaa |
41984313 |
T |
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| Q |
115 |
aaactatagatgatgaactgatcatgcagatcccattacagatatttgt |
163 |
Q |
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| T |
41984314 |
aaactatagatgatgaactgatcatgcagatcccattacagatatttgt |
41984362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 41984367 - 41984479
Alignment:
| Q |
204 |
gcaatgaggtgaaatggagactgataatattaagtagaagctgtatggaaatgtttcctttgctgttaattatatgaatcctagaccccacattatgtct |
303 |
Q |
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| T |
41984367 |
gcaatgaggtgaaatggagactgataatattaagtagaagctgtatggaaatgtttcctttgctgttaattatatgaatcctagaccccacattatgtct |
41984466 |
T |
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| Q |
304 |
gtatttagttatg |
316 |
Q |
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| T |
41984467 |
gtatttagttatg |
41984479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 356 - 434
Target Start/End: Original strand, 41984488 - 41984566
Alignment:
| Q |
356 |
ttgaaggtgacaaggaaagatagtgttagataattgggttgattcagaaaatatgaagcagactaccatagaatttatt |
434 |
Q |
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| T |
41984488 |
ttgaaggtgacaaggaaagatagtgctagataattgggttgattcagaaaatatgaagcagaataccatagaatttatt |
41984566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 41986658 - 41986716
Alignment:
| Q |
319 |
gatgctggccagatactggtttaacaattttctgctcttgaaggtgacaaggaaagata |
377 |
Q |
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| T |
41986658 |
gatgatggccagatactggtttaacaattttatgctctttaaggtgacaaggaaagata |
41986716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 41986736 - 41986774
Alignment:
| Q |
379 |
tgttagataattgggttgattcagaaaatatgaagcaga |
417 |
Q |
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| T |
41986736 |
tgttagataattgggttcattcagaaaatatgaagcaga |
41986774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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