View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12053_low_6 (Length: 346)
Name: NF12053_low_6
Description: NF12053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12053_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 331
Target Start/End: Complemental strand, 49078755 - 49078435
Alignment:
| Q |
11 |
caaaggagcacattccaggaacttcatgatgaactgcgataatcgaagctagaaccctgtaagttaaaaataatcggagattacgaaaatttaacgagat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
49078755 |
caaaggagcacattccaggaacttcatgatgaactgcgataatcgaagctagaaccctgtaagttaaaaataatcggagactacgaaaatttaacgagat |
49078656 |
T |
|
| Q |
111 |
tagaaagttatataacagattgcgaagtaaaagcatgtgaaaatgagagtaattgaattgaaattggaaataggagtgaattattgaagtaccgaagaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49078655 |
tagaaagttatataacagattgcgaagtaaaagcatgtgaaaatgagagtaattgaattgaaattggaaataggagtgaattattgaagtaccgaagaga |
49078556 |
T |
|
| Q |
211 |
aagaagacggaaattgattggtttgttgaagatttgaagagatcaacacgtagatttgtgatgttagggtttgaaaatttgggggaaataaagggattag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49078555 |
aagaagacggaaattgattggtttgttgaagatttgaagagatcaacacgtagatttgtgatgttagggtttgaaaatttgggggaaataaagggattag |
49078456 |
T |
|
| Q |
311 |
gaagcggtgaaaatggaatat |
331 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
49078455 |
gaagcggtgaaaatggaatat |
49078435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University