View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12054_high_11 (Length: 229)

Name: NF12054_high_11
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12054_high_11
NF12054_high_11
[»] scaffold0499 (1 HSPs)
scaffold0499 (7-229)||(11086-11308)
[»] chr7 (5 HSPs)
chr7 (7-229)||(45121425-45121647)
chr7 (7-229)||(8997893-8998119)
chr7 (180-229)||(7038262-7038311)
chr7 (180-229)||(12779774-12779823)
chr7 (180-229)||(12784631-12784680)
[»] chr4 (5 HSPs)
chr4 (7-96)||(49712051-49712142)
chr4 (187-229)||(31922655-31922697)
chr4 (180-229)||(35857451-35857500)
chr4 (181-229)||(13345479-13345527)
chr4 (187-229)||(49785503-49785545)
[»] chr8 (6 HSPs)
chr8 (7-131)||(11845966-11846090)
chr8 (187-229)||(33860371-33860413)
chr8 (187-229)||(7823381-7823423)
chr8 (187-229)||(25207681-25207723)
chr8 (187-229)||(30327014-30327056)
chr8 (180-229)||(25217191-25217240)
[»] chr3 (3 HSPs)
chr3 (187-229)||(41762353-41762395)
chr3 (180-229)||(34298-34347)
chr3 (182-229)||(52919566-52919613)
[»] chr2 (3 HSPs)
chr2 (180-229)||(41918825-41918874)
chr2 (187-229)||(28664847-28664889)
chr2 (187-229)||(37823681-37823723)
[»] chr1 (1 HSPs)
chr1 (180-229)||(6309625-6309674)
[»] chr5 (2 HSPs)
chr5 (181-229)||(8427213-8427261)
chr5 (187-229)||(27882634-27882676)
[»] scaffold0090 (1 HSPs)
scaffold0090 (187-229)||(47611-47653)


Alignment Details
Target: scaffold0499 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 11086 - 11308
Alignment:
Q  7 aattgcaggtggacgattggtatgttgtattttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccggatggatatg 106  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11086 aattgcatatggacgattggtatgttgtattttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccggatagatatg 11185  T
Q  107 tttaagaatatcttcttgaaggtctttatttacattctctagtcaatataattttttacaatcttcataagaattttttcttttgaaagaatattgtatt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11186 tttaagaatatcttcttgaaggtctttatttacattctctagtcaatataattttttacaatcttcataagaattttttcttttgaaagaatattgtatt 11285  T
Q  207 tgtttattgtcgttacttaaata 229  Q
    ||||||||||| |||||||||||    
T  11286 tgtttattgtcattacttaaata 11308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 45121647 - 45121425
Alignment:
Q  7 aattgcaggtggacgattggtatgttgtattttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccggatggatatg 106  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  45121647 aattgcaggtggacaattggtatgttgtattttgtagaacttaactgtgagcattgcgatttctaatcattaaaatgtactatgtatccagatggatatg 45121548  T
Q  107 tttaagaatatcttcttgaaggtctttatttacattctctagtcaatataattttttacaatcttcataagaattttttcttttgaaagaatattgtatt 206  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45121547 tttaagaatatcttcttgaaggtctttatctacattctctagtcaatataattttttacaatcttcataagaattttttcttttgaaagaatattgtatt 45121448  T
Q  207 tgtttattgtcgttacttaaata 229  Q
    ||||||||||| |||||||||||    
T  45121447 tgtttattgtcattacttaaata 45121425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 8998119 - 8997893
Alignment:
Q  7 aattgcaggtggacgattggtatgttgtattttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccggatggat--- 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||       
T  8998119 aattgcaggtggacgattggtatgttgtattttgtagaacttaagtgtgagcagtgcgatttctaatcattaaaacgtactatgtacccggatggatgga 8998020  T
Q  104 -atgtttaagaatatcttcttgaaggtctttatttacattctctagtcaatataattttttacaatcttcataagaattttttcttttgaaagaatattg 202  Q
     |||||||| || |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8998019 tatgtttaataacatcttcttgaaggtctttatctactttctctagtcaaaataattttttacaatcttcataagaattttttcttttgaaagaatattg 8997920  T
Q  203 tatttgtttattgtcgttacttaaata 229  Q
    ||||||||||||||| |||||||||||    
T  8997919 tatttgtttattgtcattacttaaata 8997893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 7038262 - 7038311
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  7038262 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 7038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 12779823 - 12779774
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  12779823 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 12779774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 12784680 - 12784631
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  12784680 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 12784631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 49712051 - 49712142
Alignment:
Q  7 aattgcaggtggacgattggtatgttgtat--tttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccg 96  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||    
T  49712051 aattgcaggtggacgattggtatgttgtatattttgtagaacttaagtgtgagcagtacgatttctaatcattaaaacgtactatgtacccg 49712142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 31922655 - 31922697
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  31922655 ttttgaaagaatattgtatttgtttattatcattacttaaata 31922697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 35857451 - 35857500
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  35857451 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 35857500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 13345479 - 13345527
Alignment:
Q  181 tttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  13345479 ttttttttttgaaagaatattgtatttgtttattatcactacttaaata 13345527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 49785545 - 49785503
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  49785545 ttttgaaagaatattgtatttgtttattatcactacttaaata 49785503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11845966 - 11846090
Alignment:
Q  7 aattgcaggtggacgattggtatgttgtattttgtagaacttaagtgtgagcattgcgatttctaatcattaaaatgtactatgtacccggatggatatg 106  Q
    |||||||||||||||||||||| ||||||||   ||||||| | ||||||||| ||  ||||||||| ||||||||||| | || | | ||| ||  ||     
T  11845966 aattgcaggtggacgattggtaagttgtattgactagaactgaggtgtgagcagtgtaatttctaattattaaaatgtaatctgaatctggaaggtgatt 11846065  T
Q  107 tttaagaatatcttcttgaaggtct 131  Q
    |||||||| |||||||| |||||||    
T  11846066 tttaagaacatcttctttaaggtct 11846090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 33860413 - 33860371
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  33860413 ttttgaaagaatattgtatttgtttattatcattacttaaata 33860371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 7823381 - 7823423
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  7823381 ttttgaaagaatattgtatttgtttattatcactacttaaata 7823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 25207723 - 25207681
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  25207723 ttttgaaagaatattgtatttgtttattatcactacttaaata 25207681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 30327014 - 30327056
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  30327014 ttttgaaagaatattgtatttgtttattatcactacttaaata 30327056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 25217240 - 25217191
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| || ||||||||||||||||||||||||| ||  ||||||||||    
T  25217240 tttttttttgtgaaagaatattgtatttgtttattatcactacttaaata 25217191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 41762395 - 41762353
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  41762395 ttttgaaagaatattgtatttgtttattatcattacttaaata 41762353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 34298 - 34347
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  34298 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 34347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 52919566 - 52919613
Alignment:
Q  182 ttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  52919566 tttttttttgaaagaatattgtatttgtttattatcactacttaaata 52919613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 41918874 - 41918825
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  41918874 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 41918825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 28664889 - 28664847
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  28664889 ttttgaaagaatattgtatttgtttattatcactacttaaata 28664847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 37823723 - 37823681
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  37823723 ttttgaaagaatattgtatttgtttattatcactacttaaata 37823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 6309674 - 6309625
Alignment:
Q  180 ttttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  6309674 tttttttttttgaaagaatattgtatttgtttattatcactacttaaata 6309625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 8427261 - 8427213
Alignment:
Q  181 tttttcttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||||    
T  8427261 ttttttttttgaaagaatattgtatttgtttattatcactacttaaata 8427213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 27882634 - 27882676
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  27882634 ttttgaaagaatattgtatttgtttattatcactacttaaata 27882676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 47653 - 47611
Alignment:
Q  187 ttttgaaagaatattgtatttgtttattgtcgttacttaaata 229  Q
    |||||||||||||||||||||||||||| ||  ||||||||||    
T  47653 ttttgaaagaatattgtatttgtttattatcactacttaaata 47611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University