View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12054_high_4 (Length: 406)

Name: NF12054_high_4
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12054_high_4
NF12054_high_4
[»] scaffold0406 (3 HSPs)
scaffold0406 (1-256)||(3109-3364)
scaffold0406 (323-401)||(2964-3041)
scaffold0406 (34-83)||(3404-3452)
[»] chr1 (16 HSPs)
chr1 (1-256)||(29289511-29289766)
chr1 (1-256)||(17653878-17654133)
chr1 (1-252)||(14659525-14659774)
chr1 (1-252)||(14649735-14649983)
chr1 (1-255)||(16100201-16100454)
chr1 (1-131)||(47050999-47051129)
chr1 (34-158)||(17479275-17479399)
chr1 (1-154)||(10991658-10991811)
chr1 (330-403)||(29289841-29289914)
chr1 (323-402)||(17654172-17654250)
chr1 (34-83)||(14650023-14650071)
chr1 (34-83)||(14659814-14659862)
chr1 (34-83)||(16100494-16100542)
chr1 (34-83)||(17479114-17479163)
chr1 (34-83)||(17653790-17653838)
chr1 (34-83)||(47050911-47050959)
[»] chr3 (14 HSPs)
chr3 (1-256)||(6911816-6912071)
chr3 (1-256)||(28103271-28103525)
chr3 (2-256)||(28058936-28059190)
chr3 (2-256)||(28069361-28069615)
chr3 (1-255)||(5706023-5706274)
chr3 (1-131)||(19434586-19434716)
chr3 (34-256)||(11200147-11200369)
chr3 (34-159)||(9436695-9436820)
chr3 (323-402)||(6912133-6912211)
chr3 (34-83)||(19434756-19434804)
chr3 (34-83)||(28058847-28058895)
chr3 (34-83)||(28069272-28069320)
chr3 (39-83)||(6911733-6911776)
chr3 (39-83)||(17958741-17958785)
[»] chr4 (17 HSPs)
chr4 (1-256)||(4763979-4764234)
chr4 (1-256)||(18694651-18694904)
chr4 (1-256)||(27561641-27561896)
chr4 (1-256)||(27734205-27734457)
chr4 (1-192)||(51533183-51533371)
chr4 (1-158)||(11513242-11513399)
chr4 (46-255)||(54352366-54352574)
chr4 (55-196)||(5359141-5359286)
chr4 (323-399)||(27734512-27734587)
chr4 (323-402)||(18694966-18695044)
chr4 (323-402)||(4764290-4764368)
chr4 (39-83)||(5359004-5359048)
chr4 (34-83)||(27561553-27561601)
chr4 (34-83)||(27734116-27734165)
chr4 (330-394)||(27561951-27562014)
chr4 (34-80)||(4763891-4763936)
chr4 (34-83)||(18694564-18694612)
[»] chr6 (27 HSPs)
chr6 (1-256)||(33062477-33062732)
chr6 (1-256)||(9814268-9814523)
chr6 (1-256)||(25478747-25479002)
chr6 (1-256)||(27526697-27526950)
chr6 (1-256)||(22013426-22013680)
chr6 (111-256)||(9822108-9822253)
chr6 (1-249)||(28040164-28040410)
chr6 (1-252)||(27650503-27650760)
chr6 (1-131)||(27683676-27683806)
chr6 (1-131)||(17355062-17355192)
chr6 (34-131)||(27690997-27691094)
chr6 (1-131)||(13142630-13142760)
chr6 (1-83)||(33055267-33055349)
chr6 (323-402)||(9821968-9822046)
chr6 (323-402)||(25479064-25479142)
chr6 (323-402)||(33062337-33062415)
chr6 (34-83)||(9814563-9814612)
chr6 (34-83)||(28040450-28040498)
chr6 (39-83)||(17355232-17355276)
chr6 (34-84)||(13142542-13142592)
chr6 (34-83)||(22013720-22013768)
chr6 (34-83)||(27526990-27527038)
chr6 (34-83)||(27683846-27683894)
chr6 (34-83)||(27691165-27691213)
chr6 (39-83)||(30129975-30130019)
chr6 (34-83)||(33055389-33055437)
chr6 (34-83)||(33062772-33062820)
[»] scaffold0713 (3 HSPs)
scaffold0713 (1-256)||(243-498)
scaffold0713 (120-256)||(4379-4515)
scaffold0713 (34-83)||(538-586)
[»] chr8 (12 HSPs)
chr8 (1-256)||(26917772-26918027)
chr8 (2-256)||(4707135-4707389)
chr8 (1-256)||(18981876-18982130)
chr8 (1-202)||(15924446-15924647)
chr8 (8-256)||(26340968-26341216)
chr8 (332-399)||(26918104-26918170)
chr8 (34-83)||(4707046-4707094)
chr8 (34-83)||(18982170-18982218)
chr8 (39-83)||(26340876-26340920)
chr8 (34-83)||(15924687-15924735)
chr8 (42-83)||(26917691-26917732)
chr8 (33-141)||(15256907-15257014)
[»] chr7 (11 HSPs)
chr7 (1-256)||(28803015-28803270)
chr7 (1-238)||(36264872-36265108)
chr7 (1-198)||(44060512-44060706)
chr7 (1-211)||(22010734-22010943)
chr7 (34-83)||(44060423-44060472)
chr7 (127-251)||(8387466-8387590)
chr7 (39-171)||(30943752-30943882)
chr7 (34-81)||(28803312-28803358)
chr7 (69-158)||(29467485-29467574)
chr7 (34-83)||(36264626-36264675)
chr7 (330-394)||(28802897-28802960)
[»] chr2 (27 HSPs)
chr2 (3-242)||(10415318-10415554)
chr2 (1-256)||(39155142-39155397)
chr2 (2-256)||(809154-809408)
chr2 (1-256)||(44323534-44323788)
chr2 (1-256)||(4696080-4696335)
chr2 (1-256)||(9311786-9312041)
chr2 (1-150)||(45331561-45331710)
chr2 (1-141)||(4405473-4405613)
chr2 (39-256)||(15001248-15001456)
chr2 (1-252)||(2587618-2587865)
chr2 (1-131)||(31713523-31713653)
chr2 (323-402)||(10415179-10415258)
chr2 (323-404)||(9312108-9312188)
chr2 (323-399)||(15001506-15001581)
chr2 (41-83)||(10415596-10415638)
chr2 (34-83)||(809065-809113)
chr2 (34-83)||(2587905-2587953)
chr2 (34-82)||(9311565-9311614)
chr2 (34-83)||(26894824-26894873)
chr2 (34-83)||(26900263-26900312)
chr2 (34-83)||(31713693-31713741)
chr2 (34-83)||(39155054-39155102)
chr2 (34-83)||(44323828-44323876)
chr2 (330-394)||(39155452-39155515)
chr2 (34-84)||(4696373-4696423)
chr2 (34-83)||(9311432-9311482)
chr2 (34-83)||(4405653-4405702)
[»] chr5 (11 HSPs)
chr5 (2-256)||(42784945-42785198)
chr5 (1-255)||(5519956-5520209)
chr5 (1-144)||(27198792-27198935)
chr5 (1-143)||(15598156-15598298)
chr5 (85-245)||(32744999-32745158)
chr5 (182-254)||(15598087-15598159)
chr5 (330-398)||(15597950-15598017)
chr5 (34-83)||(5519868-5519916)
chr5 (34-83)||(27198705-27198754)
chr5 (39-83)||(42785239-42785282)
chr5 (34-77)||(15598344-15598387)
[»] scaffold0438 (4 HSPs)
scaffold0438 (8-256)||(8148-8396)
scaffold0438 (8-256)||(11129-11377)
scaffold0438 (34-83)||(8051-8100)
scaffold0438 (39-83)||(11037-11081)
[»] scaffold0007 (2 HSPs)
scaffold0007 (34-174)||(60019-60159)
scaffold0007 (34-81)||(60235-60282)
[»] scaffold0654 (2 HSPs)
scaffold0654 (138-256)||(4308-4426)
scaffold0654 (138-256)||(5662-5780)
[»] scaffold0002 (4 HSPs)
scaffold0002 (34-130)||(413417-413513)
scaffold0002 (43-132)||(424808-424897)
scaffold0002 (180-256)||(413547-413623)
scaffold0002 (330-394)||(10232-10295)
[»] scaffold0014 (1 HSPs)
scaffold0014 (154-256)||(115628-115730)


Alignment Details
Target: scaffold0406 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 3364 - 3109
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3364 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaacggggtaattctacctaatt 3265  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3264 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 3165  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3164 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 3109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 323 - 401
Target Start/End: Complemental strand, 3041 - 2964
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattct 401  Q
    |||||| || ||||||||||||||||| || |||||||| || |||| || |||| |||||||||||||||||||||||    
T  3041 cctttcaaagacgcatatttcaaaacc-acatttcacaacatatcaaaactactatgaaaatacatacaatcaaattct 2964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 3452 - 3404
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  3452 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 3404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 29289511 - 29289766
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29289511 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 29289610  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  29289611 gaaatcacatactaggtgcacctaggtcgtcgtcattgtaaccgtaattttcaaaacaccattcttaaaacacaatgccaaatccatatttcacaacata 29289710  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29289711 acgaaacttatttcaagatatgtatcatcaaaactcaaccaaaaatctactactta 29289766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 17653878 - 17654133
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  17653878 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaattctacctaatt 17653977  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17653978 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 17654077  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  17654078 acaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 17654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 14659774 - 14659525
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14659774 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 14659675  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||  ||||||    
T  14659674 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcggaacata 14659575  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 252  Q
    |||||||| || |||| ||| || ||||| |||||||| |||||||||||||    
T  14659574 acgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctacta 14659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 14649983 - 14649735
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||| | ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14649983 ttttcaattagg-agtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 14649885  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||  ||||||    
T  14649884 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcggaacata 14649785  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 252  Q
    |||||||| || |||| ||| || ||||| |||||||| |||||||||||||    
T  14649784 acgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctacta 14649735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 16100454 - 16100201
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| |||    
T  16100454 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcagcctttccataggggcggctccatccaacggggtaattctacctgatt 16100355  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||   | ||||||||||||  |||||||    
T  16100354 gaaatcacatactaggtgcacctaggtcgtcgtcattatagccgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatattttgcaacata 16100255  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 255  Q
    ||||||||||| |||| |||  | |||||||||||||| ||||||||||| ||||    
T  16100254 acgaaacttatatcaacatacat-tcatcaaaactcaatcgaaaatctaccactt 16100201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 47050999 - 47051129
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47050999 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggaggcctttccataggggcggctccatctaacggggtaattctacctaatt 47051098  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
     ||||||||||||||||||||||||||||||    
T  47051099 aaaatcacatactaggtgcacctaggtcgtc 47051129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 17479275 - 17479399
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgt 133  Q
    |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  17479275 ccctctcctcctaatggtggcttttccattggggcggctccatctaacggggtaactatacctaattgaaatcacatactaggtgcacctaggtcgtcgt 17479374  T
Q  134 cattataaccgtaattttcaaaaca 158  Q
    || || |||| ||||||||||||||    
T  17479375 cactaaaaccataattttcaaaaca 17479399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 10991658 - 10991811
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||||  ||  |||| |||||||||||| ||||||||||| |||||||||||| ||||||| |||| ||||||||| |    
T  10991658 ttttcaattagggagtttacatctcatcgatagccctctcctcctaatggtggcctttccataggggcggctccacctaacggagtaactctacctaact 10991757  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaa 154  Q
    || |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10991758 gatatcacatactaggtgcacttaggtcgtcgtcattatacccgtaattttcaa 10991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 330 - 403
Target Start/End: Original strand, 29289841 - 29289914
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctct 403  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29289841 aaaacgcatatttcaaaacccacggttcacaagatctcaacacaactatgaaaatacatacaatcaaattctct 29289914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 17654172 - 17654250
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||    
T  17654172 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctc 17654250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 14650071 - 14650023
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  14650071 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 14650023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 14659862 - 14659814
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  14659862 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 14659814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 16100542 - 16100494
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  16100542 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 16100494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 17479114 - 17479163
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| || |||||||| ||||||||||||||||||||    
T  17479114 ccctctcctcctaatggtggtctttccataggggcggctccatctaacgg 17479163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 17653790 - 17653838
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  17653790 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 17653838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 47050911 - 47050959
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  47050911 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 47050959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 6911816 - 6912071
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6911816 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 6911915  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  6911916 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaagaccatatttcacaacata 6912015  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| |||||||||||||||||  ||||||||||||||||    
T  6912016 acaaaacttatttcaaaatacgtatcatcaaaactcaattgaaaatctactactta 6912071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 28103525 - 28103271
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28103525 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 28103426  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |   | |||||||||||||  ||||||    
T  28103425 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacatatgtctaaaaccatatttcggaacata 28103326  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || |||||||| |||| ||| || |||||||||||||| |||||||||||||||||    
T  28103325 acaaaacttatgtcaatatacgt-tcatcaaaactcaatcgaaaatctactactta 28103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 28058936 - 28059190
Alignment:
Q  2 tttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattg 101  Q
    |||||||||| || ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  28058936 tttcaattagagagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaattg 28059035  T
Q  102 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataa 201  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||   | |||||||||||||| |||||||    
T  28059036 aaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataa 28059135  T
Q  202 cgaaacttatttcaagatatgtatcatcaaaactcaaccg-aaaatctactactta 256  Q
     ||||||||| |||| ||| || |||||||||||||| || |||||||||||||||    
T  28059136 tgaaacttatgtcaatataggt-tcatcaaaactcaatcgaaaaatctactactta 28059190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 28069361 - 28069615
Alignment:
Q  2 tttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattg 101  Q
    |||||||||| || ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  28069361 tttcaattagagagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaattg 28069460  T
Q  102 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataa 201  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||   | |||||||||||||| |||||||    
T  28069461 aaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacataa 28069560  T
Q  202 cgaaacttatttcaagatatgtatcatcaaaactcaaccg-aaaatctactactta 256  Q
     ||||||||| |||| ||| || |||||||||||||| || |||||||||||||||    
T  28069561 tgaaacttatgtcaatataggt-tcatcaaaactcaatcgaaaaatctactactta 28069615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5706023 - 5706274
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||||| ||  |||| |||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||     
T  5706023 ttttcaattagggagtttacatctcattgatagccctctcctcctaatggcggcctttccattggggcggctccatctaatggagtaa--ctacctaatc 5706120  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||   | ||||||||||||| |||||||    
T  5706121 gaagtcacatactaggtgcacctaggtcgtcgtcattataatcgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatatttcgcaacata 5706220  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 255  Q
    ||||||||||| |||| ||| || ||||||||| ||||  |||||||||| ||||    
T  5706221 acgaaacttatatcaacatacgt-tcatcaaaattcaattgaaaatctaccactt 5706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 19434716 - 19434586
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  19434716 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaattctacctaatt 19434617  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
    ||||||||||||||||||||||||| |||||    
T  19434616 gaaatcacatactaggtgcacctagatcgtc 19434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 34 - 256
Target Start/End: Complemental strand, 11200369 - 11200147
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgt 133  Q
    |||| |||||||||||| | ||||||||| |||||   | ||||||| |  |||| ||||||||| |||||||||||||||||||||||||| |||||||    
T  11200369 ccctctcctcctaatggtgacctttccataggggcattttcatctaatgcagtaactctacctaactgaaatcacatactaggtgcacctagttcgtcgt 11200270  T
Q  134 cattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaa 233  Q
     |||||||  |  ||||||||||||| ||||| |||| |||   | |||||||| |||||||| | | |||||||||| |||| |||| || | ||||||    
T  11200269 tattataagtgcgattttcaaaacacaattctcaaaatacatatctaaaaccatctttcacaaaaaatcgaaacttatgtcaaaatatttaccgtcaaaa 11200170  T
Q  234 ctcaaccgaaaatctactactta 256  Q
    |||||  |||||| |||||||||    
T  11200169 ctcaattgaaaatttactactta 11200147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 9436695 - 9436820
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgt 133  Q
    |||| |||||| |||||  ||||| |||| |||||  ||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||||      
T  9436695 ccctctcctcccaatggtagccttcccataggggcaactccatctaacggagtaactctacctaaccgaaatcacatactaggtgcacctaggtcgtcac 9436794  T
Q  134 cattataaccgtaattttcaaaacac 159  Q
     ||||||| |||| || |||||||||    
T  9436795 aattataatcgtatttctcaaaacac 9436820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 6912133 - 6912211
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||  ||||||||||||||||||||||||    
T  6912133 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactgggaaaatacatacaatcaaattctc 6912211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 19434804 - 19434756
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  19434804 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 19434756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 28058847 - 28058895
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  28058847 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 28058895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 28069272 - 28069320
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  28069272 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 28069320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 6911733 - 6911776
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  6911733 tcctcctaatggtggcctttccat-ggggcggctccatctaacgg 6911776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 17958741 - 17958785
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| || ||| |||||||||||||    
T  17958741 tcctcctaatggtggcctttccataggagcgactccatctaacgg 17958785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4763979 - 4764234
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||| ||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4763979 tttttaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 4764078  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  4764079 gaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaagaccatatttcacaacata 4764178  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  4764179 acaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 4764234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 18694651 - 18694904
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||||| ||  |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||  |||||||||     
T  18694651 ttttcaattagggagtttacatctcattgatagccctctcctcctaatggcggcctttccattggggtggctccatctaatggagtaa--ctacctaatc 18694748  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18694749 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 18694848  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  18694849 acaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 18694904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 27561641 - 27561896
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| ||||||||| ||  |||  |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  27561641 ttttcaattagagagtttacctctcattgatagccccctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 27561740  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||    
T  27561741 gaaatcacatactaggtgcacctaggtcgacaccattataaccgtaattttcaaaacatcattcttaaaccacaatgctaaaaccatatatcacaacata 27561840  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||||||||| |||||| ||| ||||||||||||||||| |||| ||||| ||||||    
T  27561841 acgaaacttgtttcaaaatacgtatcatcaaaactcaatcgaagatctattactta 27561896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 27734205 - 27734457
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||| || | ||| ||||||||| ||  |||| |||||||||||||  ||||||||| |||||||||||||||||||| ||||  ||| ||||||    
T  27734205 ttttcaattcggtagtttacctctcattgatagccctctcctcctaatggcaacctttccataggggcggctccatctaacggagtaa--ctatctaatt 27734302  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  27734303 gaaatcacatactagatgcacctgggtcgtcatcattataaccataattttcaaaa-accattcttaaaacacaatgctaaaaccatatttcacaacata 27734401  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27734402 acgaaacttatttcaagatacgtatcatcaaaactcaatcgaaaatctactactta 27734457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 51533371 - 51533183
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||||| ||  |||| |||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||     
T  51533371 ttttcaattagggagtttacatctcattgatagccctctcctcctaatggcggcctttccattggggcggctccatctaatggagtaa--ctacctaatc 51533274  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttc 192  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||||||   | |||||||||||||    
T  51533273 gaaatcacatactaggtgcacctaggtcgtcgttattataaccgtaattttc-aaacctcattcttaaaacacatgtctaaaaccatatttc 51533183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 11513242 - 11513399
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||| ||||| || |||||||||| ||| ||||||||||||||||  ||| |||||||||||    
T  11513242 ttttcaattagggagtttacctctcattgatagccctctccttctaatagcagcctttccatagggtcggctccatctaacggaataactctacctaatt 11513341  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11513342 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 11513399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 46 - 255
Target Start/End: Original strand, 54352366 - 54352574
Alignment:
Q  46 aatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgt 145  Q
    |||||| |||||||||||||||| ||| ||||||| || |||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  54352366 aatggcagcctttccattggggcagcttcatctaatggagtaactctacctaatcgaaatcacatactatgtgcacctaggtcgttgtcattataaccgt 54352465  T
Q  146 aattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaa 245  Q
    |||||||||||| ||||||||||||||||   | ||||||||||||| ||||||||| ||||||    ||| ||| || |||||||||||||| || |||    
T  54352466 aattttcaaaaccccattcttaaaacacatgtctaaaaccatatttcgcaacataacaaaacttggaccaacatacgt-tcatcaaaactcaatcggaaa 54352564  T
Q  246 tctactactt 255  Q
    ||||| ||||    
T  54352565 tctaccactt 54352574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 5359141 - 5359286
Alignment:
Q  55 ctttccattggggcggctccatctaacggggtaattcta----cctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattt 150  Q
    |||||||| |||||| ||| ||||||||| |||| ||||    |||||   |||||||||| ||||||||| || |||||||||||||||||||||||||    
T  5359141 ctttccataggggcgactctatctaacggagtaactctagctacctaaccaaaatcacatagtaggtgcacgtatgtcgtcgtcattataaccgtaattt 5359240  T
Q  151 tcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaa 196  Q
    |||||||||||| ||||||||| |   | |||||||||||||||||    
T  5359241 tcaaaacaccatacttaaaacatatgtctaaaaccatatttcacaa 5359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 27734512 - 27734587
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaatt 399  Q
    |||||| |||||||||||||||||||| ||||||||||| || |||| ||||||| |||||||||||||||||||||    
T  27734512 cctttcaaaaacgcatatttcaaaacc-acgtttcacaacatatcaaaacaactatgaaaatacatacaatcaaatt 27734587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 18694966 - 18695044
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||    
T  18694966 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctc 18695044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 4764290 - 4764368
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||  ||||||||||||||||||||||||    
T  4764290 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactgtgaaaatacatacaatcaaattctc 4764368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 5359004 - 5359048
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  5359004 tcctcctaatggtggcctttccataggggcggctccatctaacgg 5359048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 27561553 - 27561601
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  27561553 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 27561601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 27734116 - 27734165
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  27734116 ccctctcctcctaatggtggcctttccataggggcagctccatctaacgg 27734165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 27561951 - 27562014
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatc 394  Q
    |||||||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||| ||||    
T  27561951 aaaacgcatatttcaacacc-acgtttcacaacatatcaaaacaaatacgaaaatacataaaatc 27562014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 4763891 - 4763936
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaa 80  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||    
T  4763891 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaa 4763936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 18694564 - 18694612
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||    
T  18694564 ccctctcctcctaatggtggccttcccat-ggggcggctccatctaacgg 18694612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33062732 - 33062477
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  || | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33062732 ttttcaattagggagtttacctctcattgatagccttctcctcctaatgacggcctttccataggggcggctccatctaacggggtaattctacctaatt 33062633  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33062632 gaaatcacatactaggtgcaactaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 33062533  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || |||||||||||||  |||||||||||||||||||| |||||||| ||||||||    
T  33062532 acaaaacttatttcaaagtatgtatcatcaaaactcaatcgaaaatccactactta 33062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 9814523 - 9814268
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||| | ||| ||||||||| ||  |||| |||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||      
T  9814523 ttttcaattaggaagtttacctctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaatggggtaattctacctaacc 9814424  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9814423 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 9814324  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  9814323 acaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 9814268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 25478747 - 25479002
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  || | |||||||||||  ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  25478747 ttttcaattagggagtttacctctcattgatagccatctcctcctaatgaaggcctttccataggggcggctccatctaacggggtaaatctacctaatt 25478846  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  25478847 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaagaccatatttcactacata 25478946  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |  ||||||||||||| |  ||||||||| |||||||| |||||||||||||||||    
T  25478947 ataaaacttatttcaaaacgtgtatcatcgaaactcaatcgaaaatctactactta 25479002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 27526950 - 27526697
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27526950 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 27526851  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||||  ||||||    
T  27526850 gaaatcacatactaggtgcatctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcggaacata 27526751  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||| || |||| ||| || ||||| |||||||| |||||||||||||||||    
T  27526750 acgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctactactta 27526697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 22013680 - 22013426
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  22013680 ttttcaattagagagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 22013581  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   | |||||||||||||| ||||||    
T  22013580 gaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacata 22013481  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    | |||| |||| |||| ||| || |||||||||| ||| ||||| |||||||||||    
T  22013480 atgaaatttatgtcaatataggt-tcatcaaaacacaatcgaaagtctactactta 22013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 111 - 256
Target Start/End: Complemental strand, 9822253 - 9822108
Alignment:
Q  111 actaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaactta 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  9822253 actaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaactta 9822154  T
Q  211 tttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  9822153 tttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 9822108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 28040410 - 28040164
Alignment:
Q  1 ttttcaattagggatttttcctctcatttattt-ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaat 99  Q
    |||||||||||| | ||| ||||||||| || | ||||  ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  28040410 ttttcaattaggaagtttacctctcattgatatgccctcccctcctaatggcggcctttccataggggcggctccatctatcggggtaattctacctaat 28040311  T
Q  100 tgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacat 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||  ||||| |||||||    | |||  ||| ||||||||||     
T  28040310 tgaaatcacatactaggtgcacctagatcgtcgtcattataaccg-gattttc-aaacaaaattctcaaaacacgtatctaaactcatctttcacaacaa 28040213  T
Q  200 aacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatcta 249  Q
    | | |||||||| |||| |||  | |||||||||||||| ||||||||||    
T  28040212 atcaaaacttatgtcaaaata-ctttcatcaaaactcaatcgaaaatcta 28040164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 27650760 - 27650503
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggc---ggcctttccattggggcggctccatctaacggggtaattctaccta 97  Q
    |||||||||||||| ||| | ||||||| ||  |||| ||||||||||||    ||||||||||| ||||||||||| ||||| || |||| ||||||||    
T  27650760 ttttcaattagggagtttacatctcattgatagccctctcctcctaatggtactggcctttccataggggcggctccgtctaatggagtaactctaccta 27650661  T
Q  98 attgaaatcacatactaggtgcacctaggtcgtcgtc----attataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttca 193  Q
    |  ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||| ||||||| ||||   | |||||||||||||     
T  27650660 accgaaatcacatactaggtgcacctaggtcgtcgtcattaattataaccgtaattttcaaaaccccaatcttaaagcacatgtctaaaaccatatttcg 27650561  T
Q  194 caacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 252  Q
    ||| |||||||||||||| |||| |||  | |||||| ||||||| |||||| ||||||    
T  27650560 caaaataacgaaacttatatcaaaata-ctttcatcagaactcaatcgaaaacctacta 27650503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 27683806 - 27683676
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  27683806 ttttcaattagagagtttaccactcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 27683707  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
    |||| ||||||||||||||||||||||||||    
T  27683706 gaaaacacatactaggtgcacctaggtcgtc 27683676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17355192 - 17355062
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| |   ||||||||| ||  |||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |||||||    
T  17355192 ttttcaattagggagtgaacctctcattgatagccctctcctcctaatggtggcctttccattggggcggctccatctaacggagtaactctgcctaatt 17355093  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
    |||| ||||||||||||||||||||||||||    
T  17355092 gaaaacacatactaggtgcacctaggtcgtc 17355062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 27691094 - 27690997
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 131  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  27691094 ccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaattgaaaacacatactaggtgcacctaggtcgtc 27690997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 13142630 - 13142760
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||| ||| ||| ||||||||| ||   | | |||||||||||||||||||||||| ||||||||||||||||| ||||||| | | |||| ||    
T  13142630 ttttcaattatggagtttacctctcattgatagtcgtctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactatccctactt 13142729  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
    ||| |||||||||||||||||||||||||||    
T  13142730 gaattcacatactaggtgcacctaggtcgtc 13142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33055349 - 33055267
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||||| ||| ||||||||| ||  |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  33055349 ttttcaattagggagtttacctctcattgatagccctttcctcctaatggcggcccttccataggggcggctccatctaacgg 33055267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 9822046 - 9821968
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||    
T  9822046 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctc 9821968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 25479064 - 25479142
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||    
T  25479064 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctc 25479142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 33062415 - 33062337
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| || ||||||||||||||||| |||| |||||| || |||| || |||| ||||||||||||||||||||||||    
T  33062415 cctttcaaagacgcatatttcaaaacc-acgtatcacaacatatcaaaactactatgaaaatacatacaatcaaattctc 33062337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 9814612 - 9814563
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  9814612 ccctctcctcctaatggtggcctttccataggggcggctccatctaacgg 9814563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 28040498 - 28040450
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  28040498 ccctttcctcctaatggtggcctttcca-tggggcggctccatctaacgg 28040450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 17355276 - 17355232
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  17355276 tcctcctaatggtggcctttccataggggcggctccatctaacgg 17355232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 13142542 - 13142592
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggg 84  Q
    |||| |||||||||||| || ||||||| ||||||||||||||||||||||    
T  13142542 ccctctcctcctaatggtggtctttccaatggggcggctccatctaacggg 13142592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 22013768 - 22013720
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  22013768 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 22013720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 27527038 - 27526990
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  27527038 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 27526990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 27683894 - 27683846
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  27683894 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 27683846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 27691213 - 27691165
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  27691213 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 27691165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 30130019 - 30129975
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| |||| |||||||||||||||    
T  30130019 tcctcctaatggtggcctttccataggggtggctccatctaacgg 30129975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 33055437 - 33055389
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  33055437 ccctctcctcccaatggtggcctttccat-ggggcggctccatctaacgg 33055389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 33062820 - 33062772
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  33062820 ccctctcctcccaatggtggcctttccat-ggggcggctccatctaacgg 33062772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 498 - 243
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  498 ttttcaattagggagtttacatctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaattctgcctaatt 399  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  398 gaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 299  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    || ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  298 acaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 4515 - 4379
Alignment:
Q  120 acctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagat 219  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||    
T  4515 acctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaat 4416  T
Q  220 atgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    | ||||||||||||||||| |||||||| ||||||||    
T  4415 acgtatcatcaaaactcaatcgaaaatccactactta 4379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 586 - 538
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  586 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 26917772 - 26918027
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||| | ||| ||||||||| ||  |||| |||||||||||| ||||||||||| |||||||||||||| |||||||||| |||||||||||    
T  26917772 ttttcaattaggaagtttacctctcattgatagccctctcctcctaatggtggcctttccatcggggcggctccatccaacggggtaactctacctaatt 26917871  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  26917872 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataatttttaaaacaccattcttaaaacacaatgctaagaccatatttcacaacata 26917971  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26917972 acgaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 26918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 4707135 - 4707389
Alignment:
Q  2 tttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattg 101  Q
    ||||||||||  | ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||    
T  4707135 tttcaattagacagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggtggctccatctaatggggtaactctacctaattg 4707234  T
Q  102 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataa 201  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4707235 aaatcacatactaggtacacctaggtcgtcgtcattataatcataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataa 4707334  T
Q  202 cgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    | ||||||||||||| ||||||||||||||||||||| |||||||| || |||||    
T  4707335 caaaacttatttcaaaatatgtatcatcaaaactcaatcgaaaatccacaactta 4707389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 18982130 - 18981876
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||||||  || ||||||||| ||  |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18982130 ttttcaattagggagcttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaattctacctaatt 18982031  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   | |||| ||||||||  ||||||    
T  18982030 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaaagcatatttcggaacata 18981931  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||||||||||| |||| ||| || ||| |||||||||| | |||||||||||||||    
T  18981930 acgaaacttatgtcaatatacgt-tcaccaaaactcaatcaaaaatctactactta 18981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15924647 - 15924446
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||||      
T  15924647 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggtggcctttccatagtggcggctccatctaatggggtaattctacctaacc 15924548  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15924547 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacata 15924448  T
Q  201 ac 202  Q
    ||    
T  15924447 ac 15924446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 26340968 - 26341216
Alignment:
Q  8 ttagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatca 107  Q
    ||||||| ||| | ||||||| ||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||   ||||||    
T  26340968 ttagggagtttacatctcattgatagccctttcctcctaatggcggcctttccataggggcggctccatttaacggagtaactctacctaaccaaaatca 26341067  T
Q  108 catactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaac 207  Q
    ||||||||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||||||||   | ||||||||||||| ||||||||||||||    
T  26341068 catactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataacgaaac 26341167  T
Q  208 ttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  26341168 ttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 26341216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 399
Target Start/End: Original strand, 26918104 - 26918170
Alignment:
Q  332 aacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaatt 399  Q
    |||||||||||||||||| | ||||||||| || |||||| ||||| ||||||||||||||| |||||    
T  26918104 aacgcatatttcaaaacc-atgtttcacaacatatcaacaaaactatgaaaatacatacaatgaaatt 26918170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 4707046 - 4707094
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  4707046 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 4707094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 18982218 - 18982170
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  18982218 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 18982170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 26340876 - 26340920
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  26340876 tcctccaaatggtggcctttccataggggcggctccatctaacgg 26340920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 15924735 - 15924687
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| ||||| |||||||||||||||    
T  15924735 ccctctcctcctaatggtggcctttcca-tggggtggctccatctaacgg 15924687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 26917691 - 26917732
Alignment:
Q  42 tcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    ||||||||| ||||||||||| |||||| |||||||||||||    
T  26917691 tcctaatggtggcctttccataggggcgactccatctaacgg 26917732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 15257014 - 15256907
Alignment:
Q  33 tccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcg 132  Q
    |||||||||||||||||||||||||| | | |||| || |||||||||   ||||| ||| ||| || | ||| ||||||||||| |||||| ||| |||    
T  15257014 tccctttcctcctaatggcggccttttcttaggggtggatccatctaa-taggtaactctccctgatcgtaatgacatactaggtacacctaagtcatcg 15256916  T
Q  133 tcattataa 141  Q
      |||||||    
T  15256915 caattataa 15256907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 28803270 - 28803015
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||    
T  28803270 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcttttccataggggcggctccatctaacggggtaactctacctaatt 28803171  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||| ||||||||||    
T  28803170 gaaatcacatactaggtgcacctaggtcgtcgccattataaccgtaattttcaaaacatcattcttaaatcacagtgctaaaaccatatatcacaacata 28803071  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||||||||| |||||| ||| ||||||||||||||||| |||| ||||||||||||    
T  28803070 acgaaacttgtttcaaaatacgtatcatcaaaactcaatcgaagatctactactta 28803015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36264872 - 36265108
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||  | ||| ||||||||| ||  | || |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||    
T  36264872 ttttcaattagaaagtttacctctcattgatagcactctcctcctaatggcggcctttccataggggcggctctatctaacggggtaactctacctaatt 36264971  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||||||||||   | |||||||||||||  |||||     
T  36264972 gaaatcacatactaggtgaacctaggtcgtcgtcattataattgtaattttcaaaacctcatttttaaaacacatgtctaaaaccatatttcgtaacatt 36265071  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaa 238  Q
    || |||||||| |||| |||||| ||||||||||||||    
T  36265072 acaaaacttatatcaacatatgt-tcatcaaaactcaa 36265108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 44060512 - 44060706
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  44060512 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaagtctacctaatt 44060611  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaaca 198  Q
    ||||||||||||||||||||||||||||||||   |||||||||  ||||| |||||||  |||| ||||||||   | |||||||| ||||||||||    
T  44060612 gaaatcacatactaggtgcacctaggtcgtcg---ttataaccgcgatttttaaaacacagttctcaaaacacatatcgaaaaccatctttcacaaca 44060706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22010943 - 22010734
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | ||||| | ||   ||| |||||| | ||| ||||||||||| ||||||||||||||||| | | ||| ||| ||||||     
T  22010943 ttttcaattagggagtttacatctcactaataggcctctcctccaactggtggcctttccataggggcggctccatctaatgag-taactct-cctaatc 22010846  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaa-caccattcttaaaacacaatgccaaaaccatatttcacaacat 199  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||   || |||||||||||||   | ||||||||||||||||||||    
T  22010845 gaaatcacatactaggtgcacctaggtcgtcatcattataactgtaattttcaaaaggcccgttcttaaaacacatgtctaaaaccatatttcacaacat 22010746  T
Q  200 aacgaaacttat 211  Q
    ||||||||||||    
T  22010745 aacgaaacttat 22010734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 44060423 - 44060472
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  44060423 ccctctcctcctaatggtggcctttccataggggcggctccatctaacgg 44060472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 8387466 - 8387590
Alignment:
Q  127 tcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatc 226  Q
    ||||| |||||| | |||| ||||||||||||  ||||| ||||||||   | |||||  | ||| |||||||| | |||||||| |||| |||||||      
T  8387466 tcgtcatcattacatccgtgattttcaaaacaaaattctgaaaacacatctctaaaacactcttttacaacatatcaaaacttatgtcaaaatatgtaaa 8387565  T
Q  227 atcaaaactcaaccgaaaatctact 251  Q
    ||||||||||||  |||||||||||    
T  8387566 atcaaaactcaattgaaaatctact 8387590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 30943882 - 30943752
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcatta 138  Q
    ||||| ||||||||| |||||||| ||| ||||| ||| ||||||| ||| |||| |||||||  |||||||||||| |||| ||| ||| || ||||||    
T  30943882 tcctcttaatggcggtctttccataggg-cggcttcatttaacggg-taactctatctaattgtgatcacatactagatgcaactaagtcatcatcatta 30943785  T
Q  139 taaccgtaattttcaaaacaccattcttaaaac 171  Q
    ||| ||| ||| | ||||||  ||||| |||||    
T  30943784 taatcgtgattcttaaaacaaaattctcaaaac 30943752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 28803358 - 28803312
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaac 81  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||    
T  28803358 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaac 28803312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 29467485 - 29467574
Alignment:
Q  69 ggctccatctaacggggtaattctacctaattgaaatcacata-ctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 158  Q
    |||||||||||||| | ||| ||| |||||| || |||| ||| |||||||||||||| ||||||||| ||||| ||| ||||| ||||||    
T  29467485 ggctccatctaacgcg-taactctccctaatcgagatcatataactaggtgcacctagatcgtcgtcactataatcgtgattttaaaaaca 29467574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 36264626 - 36264675
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| | ||||||||| || |||||||||||||||||    
T  36264626 ccctctcctcctaatggtgacctttccataggagcggctccatctaacgg 36264675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 28802960 - 28802897
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatc 394  Q
    ||||||||||||||||  |||||||||||||  || |||| |||| |||||||||||||| ||||    
T  28802960 aaaacgcatatttcaac-cccacgtttcacaccatatcaaaacaaatacgaaaatacataaaatc 28802897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 10415554 - 10415318
Alignment:
Q  3 ttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattga 102  Q
    |||||||||| | ||| ||||||||| ||  |||| |||||||||||||||||||||||| |||| ||||||||||||||| |||| |||||||||||||    
T  10415554 ttcaattaggtagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggtggctccatctaacggagtaactctacctaattga 10415455  T
Q  103 aatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataac 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||   |||||||    
T  10415454 aatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaattccaaagccatatttc---acataac 10415358  T
Q  203 gaaacttatttcaagatatgtatcatcaaaactcaaccga 242  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10415357 gaaacttatttcaagatatgtatcatcaaaactcaaccga 10415318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 39155142 - 39155397
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  39155142 ttttcaattagagagtttaccactcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 39155241  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||    
T  39155242 gaaaacacatactaggtgcacctaggtcgacgccattataaccgtaattttcaaaacatcattcttaaaccacaatgctaaaaccatatatcacaacata 39155341  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||||||||| |||||| ||| || |||||||||||||| |||| ||||| ||||||    
T  39155342 acgaaacttgtttcaaaatacgtttcatcaaaactcaatcgaagatctattactta 39155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 809154 - 809408
Alignment:
Q  2 tttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattg 101  Q
    |||||||||| || ||| ||||||||| ||  |||| ||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  809154 tttcaattagagagtttacctctcattgatagccctctcctcctaatggcagcctttccataggggcggctccatctaatggggtaactctacctaattg 809253  T
Q  102 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   | ||| |||||||||  |||||||    
T  809254 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaatccatatttcggaacataa 809353  T
Q  202 cgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||| |||| ||| |  |||||||||||||| |||||||||||||||||    
T  809354 cgaaacttatgtcaatatacgattcatcaaaactcaatcgaaaatctactactta 809408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 44323788 - 44323534
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  44323788 ttttcaattagagagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 44323689  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   | |||||||||||||| ||||||    
T  44323688 gaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaacacatgtctaaaaccatatttcagaacata 44323589  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    | |||| |||| |||| ||| || |||||||||| ||| ||||| |||||||||||    
T  44323588 atgaaatttatgtcaatataggt-tcatcaaaacacaatcgaaagtctactactta 44323534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 4696335 - 4696080
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||| ||||||||| ||| ||||| ||| ||  |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||||||    
T  4696335 ttttaaattagggagtttacctcttattgatagccctctcctcctaatgacggcctttccataggggcggctccatctaacggggtaactatacctaatt 4696236  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    ||| |||||||||||||||||||| | ||||| |||||||||| |||||||||||||| |||||||||| |||||||| |||||||||| | ||||||||    
T  4696235 gaattcacatactaggtgcacctaagccgtcgccattataaccataattttcaaaacatcattcttaaatcacaatgctaaaaccatatattacaacata 4696136  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| || |||||||||    
T  4696135 acgaaacttatttcaaaatacgtatcatcaaaactcaatcgaagatatactactta 4696080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9311786 - 9312041
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| | |||| || ||  | || ||||||||||||  |||||||||||||||||||||||||||| || |||| ||||||||||     
T  9311786 ttttcaattagggagtttacatctcgttgatagctctctcctcctaatggatgcctttccattggggcggctccatctaatggagtaactctacctaatc 9311885  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatg-ccaaaaccatatttcacaacat 199  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||    
T  9311886 gaaatcacatactaggtgcacctaggtcgtcatcattataaccgtaattttcaaaa-accattcttaaaacacaatgtctaaaaccatatttcgcaacat 9311984  T
Q  200 aacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    ||| |||||||| ||||  | |||||||||||||||||   ||| ||||||||||||    
T  9311985 aacaaaacttatgtcaaattgtgtatcatcaaaactcagtggaatatctactactta 9312041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 45331710 - 45331561
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| ||||||||| ||  |||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45331710 ttttcaattagggagtttacctctcattgatagccctctcctcctaatggaggcctttccataggggcggctccatctaacggggtaattctacctaatt 45331611  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattt 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45331610 gaaatcacatactaggtgcacctaggtcgtcgtctttataaccgtaattt 45331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 4405613 - 4405473
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||| | | ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  4405613 ttttcaattaagcagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaacggggtaactctacctaatt 4405514  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataa 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4405513 gaaatcacatactaggtgcacctaggtcgtcgtcattataa 4405473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 256
Target Start/End: Original strand, 15001248 - 15001456
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcatta 138  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||        || |||||||||||||||||||||||||||    
T  15001248 tcctcctaatggcggcctttccataggggcggctccatctaacggagtaactctacctaatt--------atgctaggtgcacctaggtcgtcgtcatta 15001339  T
Q  139 taaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaa 238  Q
    |||||||||||||||||||| ||||||||||| |||     |||| |||||||||| ||||||| |||||||| |||| ||| || ||||||||||| ||    
T  15001340 taaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatatttcaccacataaccaaacttatatcaaaatacgt-tcatcaaaactaaa 15001438  T
Q  239 ccgaaaatctactactta 256  Q
      |||| |||||||||||    
T  15001439 ttgaaagtctactactta 15001456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2587865 - 2587618
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||||||||||||| ||| |||| |||| ||  |||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  2587865 ttttcaattagggagtttacctcgcattgatagccctctccttctaatggcggcctttccataggggcggctccatctaacagggtaattctacctaatt 2587766  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||   ||||||| ||| ||| ||||||||  ||||| |||  ||    | |||||| ||||||||||||||    
T  2587765 gaaatcacatactaggtgcacctaggtcgtcacaattataatcgt-attctcaaaacaaaattctcaaa--acgtctctaaaaccgtatttcacaacata 2587669  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 252  Q
      ||||| |||  ||| ||||||| |||||||||||||  | ||||||||||    
T  2587668 tagaaac-tatgccaaaatatgtaccatcaaaactcaatggtaaatctacta 2587618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 31713653 - 31713523
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| || |||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  31713653 ttttcaattagagagtttaccactcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaatt 31713554  T
Q  101 gaaatcacatactaggtgcacctaggtcgtc 131  Q
    |||| ||||||||||||||||||||||||||    
T  31713553 gaaaacacatactaggtgcacctaggtcgtc 31713523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 10415258 - 10415179
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctc 402  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10415258 cctttccaaaacgcatatttcaaaacccacgtttcacaagatctcaatacaactacgaaaatacatacaatcaaattctc 10415179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 404
Target Start/End: Original strand, 9312108 - 9312188
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctg 404  Q
    |||||| |||| |||||||| |||| | | ||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  9312108 cctttcaaaaatgcatattttaaaatc-atgtttcacaacatatcaaaacaactacgaaaatacatacaatcaaattctctg 9312188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 323 - 399
Target Start/End: Original strand, 15001506 - 15001581
Alignment:
Q  323 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaatt 399  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| |||||||| ||||||||||||    
T  15001506 cctttcaaagacgcatatttcaaaacc-acgtttcacaatatatcaaaactactatgaaaatacgtacaatcaaatt 15001581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 10415638 - 10415596
Alignment:
Q  41 ctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  10415638 ctcctaatggtggcctttccataggggcggctccatctaacgg 10415596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 809065 - 809113
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  809065 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 809113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 2587953 - 2587905
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  2587953 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 2587905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 9311565 - 9311614
Alignment:
Q  34 ccctttcctcctaatggcggccttt-ccattggggcggctccatctaacg 82  Q
    ||||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  9311565 ccctttcctcctaatggtggccttttccataggggcggctccatctaacg 9311614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 26894824 - 26894873
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||| ||||||    
T  26894824 ccctctcctcctaatggtggcctttccaatggggcggctccatataacgg 26894873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 26900263 - 26900312
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||| ||||||    
T  26900263 ccctctcctcctaatggtggcctttccaatggggcggctccatataacgg 26900312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 31713741 - 31713693
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  31713741 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 31713693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 39155054 - 39155102
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  39155054 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 39155102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 44323876 - 44323828
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  44323876 ccctctcctcctaatggtggcctttccat-ggggcggctccatctaacgg 44323828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 39155452 - 39155515
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatc 394  Q
    |||||||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||| ||||    
T  39155452 aaaacgcatatttcaacacc-acgtttcacaacatatcaaaacaaatacgaaaatacataaaatc 39155515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 4696423 - 4696373
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggg 84  Q
    |||| |||||||||||| | |||||||||  ||||||||||||||||||||    
T  4696423 ccctatcctcctaatggtgtcctttccatatgggcggctccatctaacggg 4696373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 9311432 - 9311482
Alignment:
Q  34 ccctttcctcctaatggcggccttt-ccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| ||||||| |||| ||||||||||||||||||||    
T  9311432 ccctctcctcctaatggtggccttttccataggggcggctccatctaacgg 9311482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 4405702 - 4405653
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||| |||| ||||||||||||| ||||||    
T  4405702 ccctctcctcctaatggtggccttcccataggggcggctccatttaacgg 4405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 42785198 - 42784945
Alignment:
Q  2 tttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattg 101  Q
    ||||||||||  | ||| ||||||||| ||  |||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||    
T  42785198 tttcaattagacagtttacctctcattgatagccctctcctcctaatggcggcctttccataggggcggctccatctaatggggtaactctacctaattg 42785099  T
Q  102 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   | |||||||||||||  |||||||    
T  42785098 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaacacatgtctaaaaccatatttcggaacataa 42784999  T
Q  202 cgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||| || | ||| || |||||||||||||| |||||||||||||||||    
T  42784998 cgaaacttatgtcgatatacgt-tcatcaaaactcaatcgaaaatctactactta 42784945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5519956 - 5520209
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||||||| || ||| ||||||||| ||  |||| |||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||     
T  5519956 ttttcaattagagagtttacctctcattgatagccctctcctcctaatggtggcctttccataggggcggctccatctaatggagtaactctacctaatc 5520055  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||   | ||||||||||||| |||||||    
T  5520056 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacctcattcttaaaacacatgtctaaaaccatatttcgcaacata 5520155  T
Q  201 acgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 255  Q
    || |||||||  |||| ||| || |||||||||||||| ||||||||||| ||||    
T  5520156 acaaaacttagatcaacatacgt-tcatcaaaactcaatcgaaaatctaccactt 5520209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 27198792 - 27198935
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    ||||||| |||||| ||  ||||||||| ||  |||| ||||||||||| ||| |||||||| ||||||||| ||||||||||||||| | |||||||||    
T  27198792 ttttcaactagggagttcacctctcattgatagccctctcctcctaatgacggtctttccataggggcggcttcatctaacggggtaactatacctaatt 27198891  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccg 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27198892 gaaatcacatactaggtgcacctaggtcgtcgtcattataaccg 27198935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 15598298 - 15598156
Alignment:
Q  1 ttttcaattagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaatt 100  Q
    |||| ||| ||||| ||| ||||||||| ||  |||| ||||||||||||| | |||||||||||||||||| |||||||||| |||| ||| |||| ||    
T  15598298 tttttaatcagggagtttacctctcattgatagccctctcctcctaatggcagtctttccattggggcggctacatctaacggagtaactcttcctattt 15598199  T
Q  101 gaaatcacatactaggtgcacctaggtcgtcgtcattataacc 143  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  15598198 gaaatcacgtactaggtgcacctaggtcgtcgtcattataacc 15598156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 32744999 - 32745158
Alignment:
Q  85 gtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaac 184  Q
    |||| |||||||||  |||||||||||| ||||||| |||||| || ||||||||||||| |||||||||||| |||||||| |||||||   | |||||    
T  32744999 gtaactctacctaaccgaaatcacatacaaggtgcatctaggttgttgtcattataaccgaaattttcaaaaccccattcttcaaacacatgtctaaaac 32745098  T
Q  185 catatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaa 245  Q
    |||||||| |||||||||||||| | | |||| ||| || ||||||||||| || ||||||    
T  32745099 catatttcgcaacataacgaaacatgtatcaaaatacgt-tcatcaaaacttaatcgaaaa 32745158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 15598159 - 15598087
Alignment:
Q  182 aaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactact 254  Q
    |||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||||||  ||||||||||||||    
T  15598159 aaccatatttcataacataatgaaacttgtttcaaaatacgtatcatcaaaactcaattgaaaatctactact 15598087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 398
Target Start/End: Complemental strand, 15598017 - 15597950
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaat 398  Q
    |||||||||||||||||||| ||||||||||| || |||| ||||||||||| ||||||| ||||||||    
T  15598017 aaaacgcatatttcaaaacc-acgtttcacaacatatcaaaacaactacgaatatacataaaatcaaat 15597950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 5519868 - 5519916
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  5519868 ccctctcctcctaatggtggcctttcca-tggggcggctccatctaacgg 5519916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 27198705 - 27198754
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||||||||| | ||||||||| ||||||||||||||||||||    
T  27198705 ccctctcctcctaatggtgccctttccataggggcggctccatctaacgg 27198754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 42785282 - 42785239
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||    
T  42785282 tcctcctaatggtggcctttccat-ggggcggctccatctaacgg 42785239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 15598387 - 15598344
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatc 77  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||    
T  15598387 ccctctcctcctaatggtggcctttccataggggcggctccatc 15598344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 8148 - 8396
Alignment:
Q  8 ttagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatca 107  Q
    ||||||| ||| | ||||||| ||  |||| |||||||||||||||||||||||| ||||||||||| |||||||| |||| |||||||||   ||||||    
T  8148 ttagggagtttacatctcattgatagccctctcctcctaatggcggcctttccataggggcggctccgtctaacggagtaactctacctaaccaaaatca 8247  T
Q  108 catactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaac 207  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||   | ||||||||||||| |||||||| |||||    
T  8248 catactaggtgcacctaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataaggaaac 8347  T
Q  208 ttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  8348 ttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 8396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 11129 - 11377
Alignment:
Q  8 ttagggatttttcctctcatttatttccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatca 107  Q
    ||||||| ||| | ||||||| ||  ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||   ||||||    
T  11129 ttagggagtttacatctcattgatagccctttcctcctaatggcggcctttccataggggcggctccatttaacggagtaactctacctaaccaaaatca 11228  T
Q  108 catactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaac 207  Q
    ||||||||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||||||||   | ||||||||||||| ||||||||||||||    
T  11229 catactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaacacatgtctaaaaccatatttcgcaacataacgaaac 11328  T
Q  208 ttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  11329 ttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 11377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 8051 - 8100
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  8051 ccctctcctccaaatggtggcctttccataggggcggctccatctaacgg 8100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 11037 - 11081
Alignment:
Q  39 tcctcctaatggcggcctttccattggggcggctccatctaacgg 83  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  11037 tcctccaaatggtggcctttccataggggcggctccatctaacgg 11081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 34 - 174
Target Start/End: Complemental strand, 60159 - 60019
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgt 133  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||| ||| ||| ||| |||||| |||||||||||||||||||||||||||||||||    
T  60159 ccctctcctcctaatggtggccttcccataggggcggctccatctaatggg-taactctccctaatcgaaatcacatactaggtgcacctaggtcgtcgt 60061  T
Q  134 cattataaccgt-aattttcaaaacaccattcttaaaacaca 174  Q
    ||||||||   | | ||||||||||||||||||| |||||||    
T  60060 cattataattatgatttttcaaaacaccattctttaaacaca 60019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 60282 - 60235
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaac 81  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||    
T  60282 ccctctcctcctaatggtggcctttccataggggcggctccatctaac 60235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 4308 - 4426
Alignment:
Q  138 ataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactca 237  Q
    ||||| ||| |||||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |||    
T  4308 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 4407  T
Q  238 accgaaaatctactactta 256  Q
    |  |||||| |||||||||    
T  4408 attgaaaatttactactta 4426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 256
Target Start/End: Original strand, 5662 - 5780
Alignment:
Q  138 ataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactca 237  Q
    ||||| ||| |||||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |||    
T  5662 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 5761  T
Q  238 accgaaaatctactactta 256  Q
    |  |||||| |||||||||    
T  5762 attgaaaatttactactta 5780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 413417 - 413513
Alignment:
Q  34 ccctttcctcctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgt 130  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||||||||  ||| |||||||||   |||||| ||||||||||  ||||||||||    
T  413417 ccctctcctcctaatggcggtctttccataggggcggctccatctaacggaataactctacctaaccaaaatcaaatactaggtgtgcctaggtcgt 413513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 424808 - 424897
Alignment:
Q  43 cctaatggcggcctttccattggggcggctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcg 132  Q
    |||||||||||||||||||| |||||||||||||||| |||  ||| |||||||||  ||||||| ||||||| ||  ||||||||||||    
T  424808 cctaatggcggcctttccataggggcggctccatctatcggaataactctacctaaccgaaatcaaatactagatgtgcctaggtcgtcg 424897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 413547 - 413623
Alignment:
Q  180 aaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 256  Q
    |||||||||||||| | |||| |||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||    
T  413547 aaaaccatatttcaaatcatatcgaaacttatgtcaaaatatgtaccatcaaaactcaattgaaaatctactactta 413623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 10295 - 10232
Alignment:
Q  330 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatc 394  Q
    ||||||||||||||||  |||||||||||||| || |||| |||| |||||||||||||| ||||    
T  10295 aaaacgcatatttcaac-cccacgtttcacaacatgtcaaaacaaatacgaaaatacataaaatc 10232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 115628 - 115730
Alignment:
Q  154 aaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactac 253  Q
    ||||||||||||||||| |||   | ||||||||||||  ||||||||||||| |||| | || ||| |||||||||||||||||  |||||| ||||||    
T  115628 aaacaccattcttaaaatacatgtctaaaaccatattttgcaacataacgaaatttatgtgaaaataggtatcatcaaaactcaattgaaaatttactac 115727  T
Q  254 tta 256  Q
    |||    
T  115728 tta 115730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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