View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12054_low_11 (Length: 236)
Name: NF12054_low_11
Description: NF12054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12054_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 5745530 - 5745359
Alignment:
| Q |
1 |
tcatgatagtgttttaaaatattcagagtgtgaccaacaatcaattaaccagaaggtttatgaattatttatttggatttctatccttagccattttaaa |
100 |
Q |
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| T |
5745530 |
tcatgatagtgttttaaaatattcagagtgtgaccaacaattaattaaccagaaggtttatgaattatttatttggatttctatccttagccattttaaa |
5745431 |
T |
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| Q |
101 |
----attgtttagaagaaatcattagaactttaaaaactacaccatttatagacaaataggaaattgcatag |
168 |
Q |
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| T |
5745430 |
tgttattgtttagaagaaatcattagaactttaaaaactacaccatttatagacaaataggaaattgcatag |
5745359 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 23078812 - 23078777
Alignment:
| Q |
200 |
ctagagctcaaaaaatttaattatgaagaagtgggg |
235 |
Q |
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| T |
23078812 |
ctagagctcacaaaatttaattatgaagaagtgggg |
23078777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 13264228 - 13264273
Alignment:
| Q |
190 |
agtctagtgcctagagctcaaaaaatttaattatgaagaagtgggg |
235 |
Q |
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||||||||| |||||||||| | ||||||||| ||||||||||||| |
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| T |
13264228 |
agtctagtggctagagctcacacaatttaattgtgaagaagtgggg |
13264273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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